Search: in
Transposon
Transposon in Encyclopedia Encyclopedia
  Tutorials     Encyclopedia     Videos     Books     Software     DVDs  
       
Encyclopedia results for Transposon

Transposon





Encyclopedia results for Transposon

  1. Transposon

    Image Composite transposon.svg thumb right 400px A DNA composite transposon Transposons are sequences ... transcriptase , which is often coded by the transposon itself. Retrotransposons behave very ... cut at the target site producing sticky ends , cuts out the transposon and ligates it into the target ... polymerase followed by inverted repeats which are important for the transposon excision by transposase ... is observed in which transposon replicates itself to a new target site. Cut and paste transposons ... have an intact gene that encodes an active transposase enzyme the transposon does not need another source ... polypeptides and accordingly require transposase from another source. When a transposon is used as a genetic ... within a plasmid . ref Ivics, Z. and Izsvak, Z. 2005 A whole lotta jumpin goin on new transposon tools ... a distant familial relationship between these two transposon types. Examples The first transposons ... form of transposon in human s is the Alu sequence . It is approximately 300 bases long and can ... prominent class of transposons found in multiple species including humans. The Mariner transposon was first ... Vertebrate transposons. Cell 135, 192 192 e1 2008 . ref These characteristics of the Mariner transposon ... content 8 5 464.full ref A Helitron biology helitron is a transposon found in eukaryotes that are thought ... ways A transposon or a retroposon that inserts itself into a functional gene will most likely disable that gene. After a transposon leaves a gene, the resulting gap will probably not be repaired correctly ... a common ancestor. Since excessive transposon activity can destroy a genome, many organisms have ... organism s use RNA interference RNAi to inhibit transposon activity. Evolution has been particularly ..., 326 332. ref In humans, all of the Tc1 like transposons are inactive. As a result the first DNA transposon used as a tool for genetic purposes, the Sleeping Beauty transposon system , was a Tc1 mariner like transposon that was ressurected from an long evolutionary sleep. ref Ivics, Z., Hackett, P.B. ...   more details



  1. Transposon tagging

    DISPLAYTITLE transposon tagging orphan date March 2011 The term transposon tagging refers to a process in genetic engineering where transposon s transposable elements are amplified inside a biological cell by a tagging techique. Transposon tagging has been used with several species to isolate gene s. ref name Ara cite web first Paaras V. last Shah year 2007 title Transposable Elements url http arabidopsis.info students paaras transposable elements.htm Self published inline date March 2011 ref Even without knowing the nature of the specific genes, the process can still be used. ref name Ara Transposon tagging in plants By molecular separation of transposon s, from a cell nucleus, the cloning is enabled for genes which contain the transposons. ref name NDSU cite web title Transposon Tagging first Phillip last McClean year 1998 url http www.ndsu.edu pubweb mcclean plsc731 transposon tag4.htm Self published inline date March 2011 ref By using transposon tagging, researchers been able to add genetic elements from maize corn ref name pmid12021846 cite journal last1 Brutnell first1 Thomas title Transposon tagging in maize journal Functional & Integrative Genomics volume 2 issue 1 2 pages 4 12 year 2002 pmid 12021846 doi 10.1007 s10142 001 0044 0 ref and Antirrhinum into some other species such as tobacco , ref name pmid7753780 cite journal doi 10.1073 pnas.92.10.4175 last1 Dinesh Kumar first1 S. P. last2 Whitham first2 S. last3 Choi first3 D. last4 Hehl first4 R. last5 Corr first5 C. last6 Baker first6 B. title Transposon Tagging of Tobacco Mosaic Virus Resistance Gene N Its Possible Role in the TMV N Mediated Signal Transduction Pathway journal Proceedings of the National Academy of Sciences of the United States of America volume 92 issue 10 pages 4175 4180 year 1995 pmid 7753780 pmc 41906 jstor 2367289 ref aspen ref name pmid15095129 cite journal unused data doi 10.1073 pnas.92.10.4175 ... S title T DNA and Transposon Tagging in Aspen journal Plant Biology volume 6 issue 1 pages 5 11 year ...   more details



  1. Transposon mutagenesis

    Transposon mutagenesis , or transposition mutagenesis , is a biological process that allows genes to be transferred to a host organism s chromosome , interrupting or modifying the function of an extant gene on the chromosome and causing mutation . ref http ec.europa.eu research biotech biotech2 vol3 2 2 03 sub en.html Feeding hungry mouths European Commission ref History Transposon mutagenesis was first studied by Barbara McClintock in the mid 20th century during her Nobel Prize winning work with maize corn . ref http www.weedtowonder.org experiments transposon.html Detecting a transposon in corn Weed to Wonder ref ref name Introduction http webcache.googleusercontent.com search?q cache 3ajtlfnRJNcJ www.greenomes.org pdf clf intro.pdf 22Transposon mutagenesis 22 McClintock corn&cd 5&hl en&ct clnk&gl us Detecting a Transposon Tag in Arabidopsis Greenomes ref Dynamics In the case of bacteria , transposition mutagenesis is usually accomplished by way of a plasmid from which a transposon is extracted and inserted into the host chromosome. This usually requires a set of enzymes including transposase to be translated. ref name Introduction ref References refs External links http www.gmo safety.eu basic info 300.jumping genes phenomenon tool.html GMO Safety Jumping genes from phenomenon to tool http goliath.ecnext.com coms2 gi 0199 3433673 Transposon Mutagenisis Brief Article.html Transposon Mutagenisis Food Ingredient News http jama.ama assn.org cgi content summary 261 13 1981 a Pathogenesis and Immunity in Pertussis JAMA http www.springerlink.com content kv133u7g02242463 Transposon mutagenesis of nuclear photosynthetic genes in Zea mays SpringerLink Category Molecular biology Category Mobile genetic elements Category Mutagenesis genetics stub biology stub ...   more details



  1. Composite transposon

    Unreferenced date March 2007 A composite transposon is similar in function to simple transposon s and Insertion sequence Insertion Sequence IS elements in that it has protein coding DNA segments flanked by inverted, repeated sequences that can be recognized by transposase enzymes. A composite transposon , however, is flanked by two separate IS elements which may or may not be exact replicas. Instead of each IS element moving separately, the entire length of DNA spanning from one IS element to the other is transposed as one complete unit. Composite transposons will also often carry one or more genes conferring antibiotic resistance. See also Tn10 Retrotransposon Composite SINE Transposons Composite SINE transposons in the Bovine genome Category Mobile genetic elements genetics stub ...   more details



  1. Simple transposon

    Unreferenced date March 2007 A simple transposon is an insertion sequence IS element that contains multiple protein coding genes instead of just those needed for transposition in IS elements between the short, inverted, repeated sequences that flank its gene coding region. Category Mobile genetic elements genetics stub ...   more details



  1. Tn10

    Unreferenced auto yes date December 2009 Expert subject Biology date November 2008 Tn 10 is a transposable element , which is a sequence of DNA that is capable of mediating its own movement through the DNA of host organisms. This fragment of DNA can move from position to position on the chromosome or plasmid by cut and paste transposition also known as non replicative transposition . The Tn10 transposon is often used in genetics to transfer and select for genes of interest from one organism into the chromosome of another. Being a composite transposon , it is flanked by insertion sequences . In Tn 9 the insertion sequences are oriented in the same direction as each other, but in Tn 5 and Tn 10 the insertion sequences are symmetrical . Between the Tn 10 insertion sequences, there are a number of genes, including one conferring resistance to the antibiotic , tetracycline . This phenotype makes tn10 convenient as a genetic tool. A gene of interest is inserted into the transposon and the transposon is then transferred to new host cells. The gene of interest is then selected for by exposing these cells to tetracycline, thus eliminating any cells that did not successfully take up the transposon. Genetics stub ru Tn10 Category Mobile genetic elements ...   more details



  1. Ty2

    Ty2 may refer to PKP class Ty2 , a German made steam locomotive which was used by Polish State Railways Ty2 retrotransposon , a Saccharomyces cerevisiae transposon family. Ty the Tasmanian Tiger 2 Bush Rescue , a video game See also Ty21a disambig ...   more details



  1. Transpogene

    Orphan date January 2011 infobox biodatabase title TranspoGene and microTranspoGene logo File Database.png description Transposon transposed elements influence on the transcriptome scope organism center laboratory author Asaf Levy pmid Levy & al. 2008 ref name pmid17986453 released 2007 standard format url http transpogene.tau.ac.il download http transpogene.tau.ac.il download.html download webservice sql sparql webapp standalone license versioning frequency curation bookmark version TranspoGene is a database of Transposon transposed elements located inside Translation biology protein coding genes of seven species. ref name pmid17986453 cite journal quotes yes last Levy first Asaf authorlink coauthors Sela Noa, Ast Gil year 2008 month Jan title TranspoGene and microTranspoGene transposed elements influence on the transcriptome of seven vertebrates and invertebrates journal Nucleic Acids Res. volume 36 issue Database issue pages D47 52 publisher location England issn pmid 17986453 doi 10.1093 nar gkm949 bibcode oclc id url pmc 2238949 language eng format accessdate laysummary laysource laydate quote ref See also Transposon References references External links http transpogene.tau.ac.il Category Biological databases Category Mobile genetic elements Biodatabase stub ...   more details



  1. Transposase

    Transposase is an enzyme that binds to the ends of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism. The word transposase was first coined by the individuals who cloned the enzyme required for tranposition of the Tn3 transposon. ref Cell. 1979 Dec 18 4 1153 63. ref The existence of transposons was postulated in the late 1940s by Barbara McClintock , who was studying the inheritance of maize, but the actual molecular basis for transposition was described by later groups. McClintock discovered that pieces of the chromosomes changed their position, jumping from one chromosome to another. The repositioning of these transposons which coded for color allowed other genes for pigment to be expressed ... ref The transposon codes for antibiotic resistance to kanamycin and other aminoglycoside antibiotics ... MM The transposition of a transposon often needs only three pieces the transposon, the transposase enzyme, and the target DNA for the insertion of the transposon. ref name MM This is the case with Tn5 ... transposases contain a DDE motif, which is the active site that catalyzes the movement of the transposon ... hyperactive and catalyzes the movement of the transposon. ref name BC The glutamate is transformed ... MM Image PDB 1muh EBI.jpg right thumb There are several steps which catalyze the movement of the transposon ..., and strand transfer. Transposase then binds to the DNA strand and creates a clamp over the transposon end of the DNA and inserts into the active site. Once the transposase binds to the transposon, it produces a synaptic complex in which two transposases are bound in a cis trans relationship with the transposon ... on both ends and create a hairpin formation, which separates the transposon from the donor DNA. ref name MM Next, the transposase moves the transposon to a suitable location. Not much is known ... in the integration of the transposon into the target DNA. ref name MM As mentioned before, due to the mutations ...   more details



  1. Signature tagged mutagenesis

    Context date October 2009 Often abbreviated to STM, Signature Tagged Mutagenesis is a Genetics genetic technique used to study gene function. Recent advances in genome sequencing have allowed us to catalogue a large variety of organisms genomes, but the function of the genes they contain is still largely unknown. Using STM, a scientist may infer what function the product of a particular gene has by disabling it and observing the effect on the organism. The original and most common use of STM is to discover which genes in a pathogen are involved in virulence in its host, so that better medical treatments can be designed. Basic Premise The gene in question is inactivated by insertional mutation a transposon is used which inserts itself into the gene sequence. When that gene is transcribed and translated into a protein, the insertion of the transposon affects the protein structure and in theory prevents it from functioning. In STM, mutants are created by random transposon insertion and each transposon contains a different tag sequence that uniquely identifies it. If an insertional mutant bacterium exhibits a phenotype of interest, such as susceptibility to an antibiotic it was previously resistant to, then the scientist will sequence its genome and run a search on a computer for any of the tags used in the experiment. When a tag is located, the gene that it disrupts is also thus located It will reside somewhere between a start and stop codon which mark the boundaries of the gene . Scientists may use STM to discover which genes are critical to a pathogen s virulence by injecting a pool of different random mutants into an animal model such as a mouse and observing which of the mutants survive and proliferate in the host. Those mutant pathogens that didn t survive in the host must have had an inactivated gene that was needed for virulence. This is hence an example of a negative selection method. References Henri L Saenz and Christoph Dehio , 2005 , Signature tagged mutage ...   more details



  1. Triparental mating

    Triparental mating is a form of Bacterial conjugation where a conjugative plasmid present in one bacterial strain assists the transfer of a mobilizable plasmid present in a second bacterial strain into a third bacterial strain. Plasmid s are introduced into bacteria for such purposes as transformation genetics transformation , cloning , or transposon mutagenesis. Triparental matings can help overcome some of the barriers to efficient plasmid mobilization. For instance, if the conjugative plasmid and the mobilizable plasmid are members of the same incompatibility group they do not need to stably coexist in the second bacterial strain for the mobilizable plasmid to be transferred. Process Requirements A helper strain , Carrying a conjugative plasmid such as the F plasmid that codes for genes required for Bacterial conjugation conjugation and DNA transfer. A donor strain , Carrying a mobilizable plasmid that can utilize the transfer functions of the conjugative plasmid. A recipient strain , you wish to introduce the mobilizable plasmid into. Five to seven days are required to determine if the plasmid was successfully introduced into the new bacterial strain and confirm that there is no carryover of the helper or donor strain. In contrast, Electroporation does not require a helper or donor strain. This helps avoid possible contamination with other strains. The introduction of the plasmid can be verified in the recipient strain in two days, making electroporation a faster and more efficient method of transformation. See also Bacterial conjugation plasmid transposon Applications transposon applications bacteriophage External links http www.mun.ca biochem courses 4103 topics plasmids.html Basic plasmid information http wheat.pw.usda.gov lazo methods lazo xctripar.html Protocol for Xanthomonas http www.cmdr.ubc.ca bobh methods TRIPARENTALMATING1.html Protocol for P. aeruginosa References Unreferenced date January 2007 Category Molecular biology pt Conjuga o triparental ...   more details



  1. Insertion sequence

    at their extremities e.g. Tn 7 . A complex transposon does not rely on flanking insertion sequences ...   more details



  1. Knockout rat

    S, Tosaka K, Takahashi R, Ueda M, Keng VW, Horie K, Takeda J Transposon tagged mutagenesis in the rat .... em piggyBac em PB DNA transposons Image PB lifecycle2.jpg thumb right 400px em piggyBac em transposon ... enzyme PB transposase , encoded by the transposon itself, excises and re integrates the transposon ... repeats ITRs that flank the transposon it binds to these sequences and catalyzes excision of the transposon ... containing donor transposon, a recombinant transposon comprising a gene trap flanked by the binding sites for the transposase ITRs . The transposase will catalyze the excision of the transposon ... al., Efficient transposition of the piggyBac PB transposon in mammalian cells and mice. Cell, 2005 ... 400px Sleeping Beauty transposon technology The sleeping beauty SB transposon is a derivative of the Tc1 .... An active Tc1 mariner transposon, synthesized from alignment of inactive transposons from the salmonid subfamily of elements, was awoken to form the transposon named Sleeping Beauty. ref Ivics, Z., et al., Molecular reconstruction of Sleeping Beauty, a Tc1 like transposon from fish, and its transposition ... itself via a cut and paste mechanism whereby a transposase enzyme, encoded by the transposon itself, excises and re integrates the transposon at other sites within the genome. The 340 amino acid SB protein recognizes inverted terminal repeats ITRs that flank the transposon it binds to these sequences and catalyzes excision of the transposon. SB then integrates into random sites within the genome ... resolution genome wide mapping of transposon integration in mammals. Mol Cell Biol, 2005. 25 6 ... superfamily of transposable elements. Trends Genet, 1999. 15 8 p. 326 32. ref The SB transposon ... and genomic rearrangements in the mouse as a result of transposon mobilization from chromosomal ... the Sleeping Beauty transposon system. Nat Methods, 2005. 2 10 p. 763 9. ref ref Kitada, K., et al., Transposon tagged mutagenesis in the rat. Nat Methods, 2007. 4 2 p. 131 3. ref ref Geurts, A.M., et ...   more details



  1. Mutagenesis

    Mutagenesis is a process by which the genetic information of an organism is changed in a stable manner, either in nature or experimentally by the use of chemicals or radiation . Mutagenesis as a science was developed especially by Charlotte Auerbach in the first half of the 20th century. ref http pagerankstudio.com Blog 2010 10 charlotte auerbach biography life and career facts invented ref There are the following types of mutagenesis Directed mutagenesis Insertional mutagenesis PCR mutagenesis Signature tagged mutagenesis Site directed mutagenesis Transposon mutagenesis See also Mutation Transfection transformation genetics transformation References references Genetics stub wikt Category Mutagenesis az Mutagenez de Mutagenese dsb Mutageneza es Mutag nesis fr Mutagen se he nl Mutagenese ru sv Mutagenes uk ...   more details



  1. Helitron (biology)

    A helitron is a transposon found in eukaryotes that are thought to replicate by a rolling circle mechanism. References cite journal last Kapitonov first V. V. authorlink coauthors Jurka, J. year 2001 month title Rolling circle transposons in eukaryotes journal Heredity journal Proc Natl Acad Sci U S A. volume 98 issue 15 pages 8714 8719 doi 10.1073 pnas.151269298 url accessdate pmc 37501 quote pmid 11447285 cite pmid 17850916 cite journal last Lal first S. K. authorlink coauthors Hannah, L. C. year 2005 month title Plant genomes Massive changes of the maize genome are caused by Helitrons journal Heredity journal Heredity volume 95 issue 6 pages 421 422 doi 10.1038 sj.hdy.6800764 url accessdate quote pmid 16222326 cite doi 10.1073 pnas.0910273106 references Category Molecular biology Category Mobile genetic elements ...   more details



  1. Mobile genetic elements

    Image Bacterial mobile elements.svg thumb 400px right Mobile genetic elements in the Cell left and in what ways they can be acquired right . Mobile genetic elements MGE are a type of DNA that can move around within the genome . They include Transposon s also called transposable elements Retrotransposons Transposon Class II DNA transposons DNA transposons Insertion sequences Plasmids Bacteriophage elements, like Mu phage Mu which integrates randomly into the genome Group II intron s The total of all mobile genetic elements in a genome may be referred to as the mobilome . Barbara McClintock was awarded the List of Nobel laureates in Physiology or Medicine 1983 1983 Nobel Prize in Physiology or Medicine for her discovery of mobile genetic elements . ref name nobel med 1983 cite web title The Nobel Prize in Physiology or Medicine 1983 url http nobelprize.org nobel prizes medicine laureates 1983 publisher nobelprize.org accessdate 14 July 2010 ref See also Horizontal gene transfer Classification of mobile genetic elements References Miller, W.J. and Capy, P. eds. 2004. Mobile genetic elements protocols and genomic applications . Humana Press. ISBN 1 58829 007 7 Shapiro, J.A. ed 1983. Mobile genetic elements . Academic Press. ISBN 0 12 638680 3 reflist Genetic recombination Category Genetics Category Mobile genetic elements ar ca Element m bil gen tic gl Elemento m bil it Elementi trasponibili ru uk ...   more details



  1. Tn3 resolvase

    Tn3 resolvase is one out of three proteins that are encoded on the 4957 base pair Tn3 transposon . Apart from Tn3 resolvase or tnpR, this transposon also carries a transposase or tnpA and a lactamase Bla that confers resistance to lactam antibiotics . Initially discovered as a repressor of transposase, resolvase also plays a role in facilitating Tn3 replication Sherratt 1989 . Mechanism of replication Tn3 replicates by intermolecular integrative transposition . This process is catalyzed by the Tn3 transposase and it results in a fusion of the original host DNA with the target DNA molecule creating a cointegrate along with the replication of the transposon. To separate the host and target molecules Tn3 resolvase executes site specific recombination between the old and new copy of transposon at a specific site called res , which is present in each copy of the transposon. Res is 114 bp long and it consists of 3 sub sites, namely sites I, II and III. Each of these sites is of different lengths 28, 34 and 25bp, respectively and they are unevenly spaced with 22bp separating sites I and II and only 5bp between sites II and III. The sites consist of 6bp inverted repeat motifs flanking a central sequence of variable length. These motifs act as binding sites for resolvase, so that each site binds a resolvase dimer but with varying affinity and probably a slightly different protein DNA complex architecture. ref name pmid6326096 cite journal author Abdel Meguid SS, Grindley ND, Templeton NS, Steitz TA title Cleavage of the site specific recombination protein gamma delta resolvase the smaller of two fragments binds DNA specifically journal Proc. Natl. Acad. Sci. U.S.A. volume 81 issue 7 pages 2001 5 year 1984 month April pmid 6326096 pmc 345424 doi 10.1073 pnas.81.7.2001 url ref ..., the cointegrate into two original molecules, each one now containing a copy of the Tn3 transposon ... Transposon mediated site specific recombination in vitro DNA cleavage and protein DNA linkage at the recombination ...   more details



  1. Gene silencing

    interfering RNA siRNA dsRNA Dicer Transposon s Ribozyme and antisense technology are the two approaches ...   more details



  1. Retroposon

    Retroposons are repetitive DNA fragments which are inserted into chromosome s after they had been reverse transcription reverse transcribed from any RNA molecule. In contrast to retrotransposon s, they never encode Reverse Transcriptase RT . Therefore, they are non autonomous elements with regard to transposition genetics transposition activity. compare Transposon s Non Long terminal repeat LTR retrotransposons such as the human L1 elements are sometimes falsely referred to as retroposons. Retroposition accounts for approximately 10,000 gene duplication events in the human genome, of which approximately 10 are functional. Such genes are called retrogene s and represent a certain type of retroposons. A classical event is the retroposition of a spliced pre mRNA molecule of the c src gene into the proviral ancestor of the Rous Sarcoma Virus RSV . The retroposed c src pre mRNA still contained a single intron and within RSV is now referred to as v src gene. References Emerson JJ, Kaessmann H, Betran E, Long M 2004 Extensive gene traffic on the mammalian X chromosome. Science 303 537 540 Category Mobile genetic elements genetics stub de Retroposon uk ...   more details



  1. Genome survey sequence

    Cleanup date February 2009 In the fields of bioinformatics and computational biology, Genome Survey Sequences GSS are primary structure nucleotide sequences similar to expressed sequence tag EST s, with the exception that most of them are Genome genomic in origin, rather than mRNA . The name comes from the homonym National Center for Biotechnology Information NCBI GenBank division, which contains but is not limited to the following types of data random single pass read genome survey sequences cosmid BAC YAC end sequences exon trapped genomic sequences Alu Polymerase chain reaction PCR sequences transposon tagged sequences Genome Survey Sequences are typically generated and submitted to NCBI by labs performing genome sequencing and are used, amongst other things, as a framework for the mapping and sequencing of genome size pieces included in the standard GenBank divisions. References http www.ncbi.nlm.nih.gov dbGSS The Genome Survey Sequences Database homepage ftp ftp.ncbi.nih.gov genbank release.notes gb96.release.notes GenBank Flat File 96.0 Release Notes Category Bioinformatics ...   more details



  1. Space Invaders (disambiguation)

    Space Invaders is an arcade video game designed by Tomohiro Nishikado in 1978. Space Invaders may also refer to Spaced Invaders , a 1990 science fiction comedy by Patrick Read Johnson Prize Space Invaders , a skill with prizes machine released in 1990 by BWB Space Invaders Evolution , a 2005 remake of the original acade game for the PlayStation Portable Space Invaders Extreme , a 2008 remake of the original arcade game for the Nintendo DS Space Invaders Get Even , a 2008 spin off of the original arcade game for the Wii Space Invaders Invasion Day , a 2003 video game developed by Taito Space Invaders , a three episode story arc in the 2003 Teenage Mutant Ninja Turtles 2003 TV series Teenage Mutant Ninja Turtles TV series SPACE INVADERS biology a set of DNA transposon families described by Pace et al in 2008. See also Invaders from Space , a 1964 film The Invaders disambiguation Alien invasion disambiguation disambig da Space invaders ...   more details



  1. Inverse polymerase chain reaction

    Unreferenced date December 2009 Image Inverse PCR.png thumb right 250px Summary of the inverse PCR process. Inverse polymerase chain reaction Inverse PCR is a variant of the polymerase chain reaction that is used to amplify DNA with only one known sequence. One limitation of conventional PCR is that it requires primer molecular biology primers complementary to both termini of the target DNA, but this method allows PCR to be carried out even if only one sequence is available from which primers may be designed. Inverse PCR is especially useful for the determination of Insert molecular biology insert locations. For example, various retrovirus es and transposon s randomly integrate into genomic DNA . To identify the sites where they have entered, the known, internal viral or transposon sequences can be used to design primers that will amplify a small portion of the flanking, external genomic DNA. The amplified product can then be sequenced and BLAST compared with DNA databases to locate the sequence which has been disrupted. The inverse PCR method involves a series of restriction digest s and DNA ligase ligation , resulting in a looped fragment that can be primed for PCR from a single section of known sequence. Then, like other polymerase chain reaction processes, the DNA is amplified by the temperature sensitive DNA polymerase A target region with an internal section of known sequence and unknown flanking regions is identified Genomic DNA is digested into fragments of a few kilobase s by a usually low moderate frequency 6 8 base cutting restriction enzyme . Under low DNA concentrations, self ligation is induced to give a circular DNA product. PCR is carried out as usual, with primers complementary to sections of the known internal sequence. Finally the sequence is compared with the sequence available in the data base. Note although the figure suggests that the circularized ligation product is digested prior to PCR, this is not the case. PCR does not require linear prod ...   more details



  1. Piwi-interacting RNA

    and piRNAs in Germ Cell Maintenance and Transposon Silencing in Zebrafish. Cell, 2007. 129 1 p. 69 ... Transposon Mobility in the Caenorhabditis elegans Germline. Molecular Cell, 2008. 31 1 p. 79 90. ref ..., J., et al., An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing. Science, 2008 ... Loci as Master Regulators of Transposon Activity in Drosophila. Cell, 2007. 128 6 p. 1089 1103. ref ... its attacks on transposon transcripts, the ping pong cycle acts only at the level of transcription ... the silencing of transposon s. The majority of piRNAs are antisense RNA antisense to transposon ... that the activity of piRNAs in transposon silencing is most important during the development of the embryo ... proteins to their transposon targets ref name Aravin2 . A decrease or absence of PIWI protein expression ... redundant functionality in transposon control in mammalian oocytes ref name Malone . piRNAs appear ...   more details



  1. Insertional mutagenesis

    . In this case a transposon, e.g. Sleeping Beauty , is designed to interrupt a gene in such a way that it causes maximal genetic havoc. Specifically, the transposon contains signals to truncate expression ...   more details



  1. Sleeping Beauty (disambiguation)

    Beauty transposon system, which is used to create a knockout rat Commented out entry with no Wikipedia article & no supporting WP article to link to Sleeping Beauty Transposon System disambig bg ...   more details




Articles 1 - 25 of 143          Next


Search   in  
Search for Transposon in Tutorials
Search for Transposon in Encyclopedia
Search for Transposon in Videos
Search for Transposon in Books
Search for Transposon in Software
Search for Transposon in DVDs
Search for Transposon in Store


Advertisement




Transposon in Encyclopedia
Transposon top Transposon

Home - Add TutorGig to Your Site - Disclaimer

©2011-2013 TutorGig.com. All Rights Reserved. Privacy Statement