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Encyclopedia results for Small nuclear RNA

Small nuclear RNA





Encyclopedia results for Small nuclear RNA

  1. Small nuclear RNA

    Small nuclear ribonucleic acid snRNA is a class of small RNA molecules that are found within the nucleus of eukaryotic cells. They are transcribed by RNA polymerase II or RNA polymerase III and are involved in a variety of important processes such as RNA splicing removal of intron s from hnRNA , regulation of transcription factors 7SK RNA or RNA polymerase II B2 RNA , and maintaining the telomere s. They are always associated with specific proteins, and the complexes are referred to as SnRNP small nuclear ribonucleoprotein s snRNP often pronounced snurps . These elements are rich in uridine content. A large group of snRNAs are known as snoRNA small nucleolar RNAs snoRNAs . These are small RNA molecules that play an essential role in RNA biogenesis and guide chemical modifications of ribosomal RNAs rRNAs and other RNA genes tRNA and snRNAs . They are located in the nucleolus and the Cajal body Cajal bodies of eukaryotic cells the major sites of RNA synthesis . External links MeshName Small Nucleolar RNA MeshName Small Nuclear RNA genetics stub molecular cell biology stub biochem stub Nucleic acids Category RNA Category Molecular genetics Category Non coding RNA cs snRNA de SnRNA it Small nuclear RNA pl SnRNA pt Pequeno ARN nuclear ru uk zh RNA he snRNA ...   more details



  1. U7 small nuclear RNA

    Rfam box acc RF00066 description U7 small nuclear RNA abbreviation U7 avg length 59.10 avg identity 65.00 ... SR release 10.0 The U7 small nuclear RNA U7 snRNP is an RNA molecule involved in the RNA splicing ... of the Drosophila U7 small nuclear RNA. journal Proc Natl Acad Sci U S A volume 100 issue 16 pages ... bodies preferentially associate with U4, U11, and U12 small nuclear RNA genes in interphase HeLa ... RNAs can be compensated by insertions into the U7 small nuclear RNA. journal Proc Natl Acad ..., Sch mperli D title A synthetic histone pre mRNA U7 small nuclear RNA chimera undergoing cis cleavage ..., Gall JG title U7 small nuclear RNA in C snurposomes of the Xenopus germinal vesicle. journal Proc Natl ... cite journal author Watkins NJ, Phillips SC, Turner PC title The U7 small nuclear RNA genes ... title A transcriptional analysis of the gene encoding mouse U7 small nuclear RNA. journal Gene volume ... PC title Deletions downstream of the 3 box of the mouse U7 small nuclear RNA gene dramatically affect ... title The mouse U7 small nuclear RNA gene promoter functions efficiently in Xenopus oocytes. journal ... U7 small nuclear RNA. journal Biochim Biophys Acta volume 1088 issue 1 pages 151 4 year 1991 pmid 1989694 ... Soldati D, Sch mperli D title Structural and functional characterization of mouse U7 small nuclear RNA ... ML title Analysis of a sea urchin gene cluster coding for the small nuclear U7 RNA, a rare ... U7 small nuclear RNA suggest specific contacts between histone mRNA precursor and U7 RNA during RNA ... reflist 2 External links Rfam id RF00066 name U7 small nuclear RNA http rnp.uthscsa.edu index.html The uRNA database Category Small nuclear RNA Category Spliceosome Category RNA splicing molecular cell ... nuclear pre mRNAs and self splicing intron s. The 5 end of U7 RNA is thought to base pair to a conserved ... cleavage factor I interacts with the U7 small nuclear ribonucleoprotein and participates ... mRNA splicing by antisense U7 small nuclear RNAs. journal Mol Ther volume 12 issue 6 pages 1013 22 ...   more details



  1. U2 small nuclear RNA auxiliary factor 1

    have been identified. ref name entrez cite web title Entrez Gene U2AF1 U2 small nuclear RNA auxiliary ... ref Interactions U2 small nuclear RNA auxiliary factor 1 has been shown to Protein protein ... small nuclear ribonucleoprotein auxiliary factor small subunit journal PNAS Proc. Natl. Acad. Sci ... and intracellular localization of the U2 small nuclear ribonucleoprotein auxiliary factor small ... factor, comprising a U2AF2 large and a small subunit, is a non snRNP protein required for the binding of U2 snRNP to the pre mRNA branch site. This gene encodes the small subunit which plays a critical role in both constitutive and exonic splicing enhancer enhancer dependent RNA splicing by directly ... of nuclear protein 4.1 with pre mRNA splicing factors. journal J. Cell. Sci. volume 111 Pt 14 ...   more details



  1. Small nucleolar RNA R41

    Rfam box acc RF00205 description Small nucleolar RNA R41 abbreviation snoR41 avg length 93.30 avg identity 77.00 type Gene snRNA snoRNA CD box se Griffiths Jones SR ss Predicted Griffiths Jones SR release 10.0 Small nucleolar RNA R41 also known as snoR41 is a non coding RNA ncRNA molecule identified in plants which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoR41 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . snoR41 was identified by computational screening the rice Oryza sativa genome and is predicted to act as a methylation guide for 18S and 25S ribosomal RNA rRNA . snoR41 has been alternatively named snoZ154 and snoZ231 in rice. The 18S methylation site is reported to be homologous to that targeted by Small nucleolar RNA SNORD62 U62 in humans but there appears to be little sequence similarity between the two snoRNAs. References references External links Rfam id RF00205 name Small nucleolar RNA R41 Rfam id RF00153 name Small nucleolar RNA SNORD62 http bioinf.scri.sari.ac.uk cgi bin plant snorna home plant snoRNA database Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORD77

    Rfam box acc RF00591 description Small nucleolar RNA SNORD77 abbreviation SNORD77 avg length 68.50 avg identity 65.00 type Gene snRNA snoRNA CD box se Marantidis E, INFERNAL ss Predicted RNAalifold release 10.0 U77 belongs to the C D family of snoRNA s. It is predicted to guide 2 O ribose methylation of large 28S rRNA subunit at position A1521. ref cite journal last Tycowski first KT coauthors Aab A, Steitz JA year 2004 title Guide RNAs with 5 caps and novel box C D snoRNA like domains for modification of snRNAs in metazoa journal Curr Biol. volume 14 pages 1985&ndash 1995 pmid 15556860 doi 10.1016 j.cub.2004.11.003 issue 22 ref The C D snoRNAs Small nucleolar RNA SNORD44 U44 , Small nucleolar RNA SNORD47 U47 , Small nucleolar RNA SNORD74 U74 , Small nucleolar RNA SNORD75 U75 , Small nucleolar RNA SNORD76 U76 , Small nucleolar RNA SNORD78 U78 , Small nucleolar RNA SNORD79 U79 , Small nucleolar RNA SNORD80 U80 and Small nucleolar RNA SNORD81 U81 share the same host gene as U77 non coding . ref cite journal last Lestrade first L coauthors Weber MJ year 2006 title snoRNA LBME db, a comprehensive database of human H ACA and C D box snoRNAs journal Nucleic Acids Res. volume 34 pages D158&ndash D162 pmid 16381836 doi 10.1093 nar gkj002 issue Database issue pmc 1347365 ref References reflist 1 External links Rfam id RF00591 name Small nucleolar RNA SNORD77 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORD78

    Rfam box acc RF00592 description Small nucleolar RNA SNORD78 abbreviation SNORD78 avg length 63.60 avg identity 82.00 type Gene snRNA snoRNA CD box se Marantidis E, INFERNAL ss Predicted Daub J release 10.0 U78 belongs to the CD family of snoRNA s. It is predicted to guide 2 O ribose methylation of the large 28S rRNA subunit at position G4593. ref cite journal last Tycowski first KT coauthors Aab A, Steitz JA year 2004 title Guide RNAs with 5 caps and novel box C D snoRNA like domains for modification of snRNAs in metazoa journal Curr Biol. volume 14 pages 1985&ndash 1995 pmid 15556860 doi 10.1016 j.cub.2004.11.003 issue 22 ref The snoRNAs Small nucleolar RNA SNORD44 U44 , Small nucleolar RNA SNORD47 U47 , Small nucleolar RNA SNORD74 U74 , Small nucleolar RNA SNORD75 U75 , Small nucleolar RNA SNORD76 U76 , Small nucleolar RNA SNORD77 U77 , Small nucleolar RNA SNORD79 U79 , Small nucleolar RNA SNORD80 U80 and Small nucleolar RNA SNORD81 U81 , also of the C D family, share the same host gene with U78 protein non coding . ref cite journal last Lestrade first L coauthors Weber MJ year 2006 title snoRNA LBME db, a comprehensive database of human H ACA and C D box snoRNAs journal Nucleic Acids Res. volume 34 pages D158&ndash D162 pmid 16381836 doi 10.1093 nar gkj002 issue Database issue pmc 1347365 ref References reflist 1 External links Rfam id RF00592 name Small nucleolar RNA SNORD78 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA psi28S-3327

    Rfam box acc RF00544 description Small nucleolar RNA psi28S 3327 abbreviation snopsi28S 3327 avg length 139.90 avg identity 73.00 type Gene snRNA snoRNA HACA box se Moxon SJ, INFERNAL ss Predicted RNAFOLD Moxon SJ release 10.0 Small nucleolar RNA psi28S 3327 also known as snoRNA psi28S 3327 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the Eukaryote eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA snoRNA and also often referred to as a guide RNA . This Drosophila melanogaster Drosophila specific snoRNA is a member of the Small nucleolar RNA H.2FACA box H ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridine 3327 in Drosophila 28S and U1920 in Drosophila 18S rRNA to pseudouridine ref name pmid15199136 cite journal author Kiss AM, J dy BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 issn pmc 480876 ref . References references External links Rfam id RF00544 name Small nucleolar RNA psi28S 3327 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORA58

    Rfam box acc RF00418 description Small nucleolar RNA SNORA58 abbreviation SNORA58 avg length 134.90 avg identity 78.00 type Gene snRNA snoRNA HACA box se Moxon SJ, INFERNAL ss Predicted PFOLD release 10.0 Small nucleolar RNA SNORA58 also known as ACA58 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA58 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA58 is predicted to guide the pseudouridylation of U3823 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . snoRNA ACA58 is homologous to the mouse snoRNA sequence MBI 12 described in ref name pmid11387227 cite journal author Huttenhofer A, Kiefmann M, Meier Ewert S, et al. title RNomics an experimental approach that identifies 201 candidates for novel, small, non messenger RNAs in mouse journal EMBO J. volume 20 issue 11 pages 2943 53 year 2001 pmid 11387227 doi 10.1093 emboj 20.11.2943 pmc 125495 ref . References reflist 1 External links Rfam id RF00418 name Small nucleolar RNA SNORA58 http www snorna.biotoul.fr plus.php?id ACA58 snoRNAbase entry for ACA58 Small nucleolar RNA SNORA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORA68

    Rfam box acc RF00263 description Small nucleolar RNA SNORA68 abbreviation SNORA68 avg length 123.00 avg identity 56.00 type Gene snRNA snoRNA HACA box se Moxon SJ, INFERNAL ss Predicted PFOLD release 10.0 Small nucleolar RNA SNORA68 also known as U68 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA68 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA68 is predicted to guide the pseudouridylation of U4393 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00263 name Small nucleolar RNA SNORA68 http www snorna.biotoul.fr plus.php?id U68 snoRNAbase entry for U68 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA69

    Rfam box acc RF00265 description Small nucleolar RNA SNORA69 abbreviation SNORA69 avg length 128.90 avg identity 69.00 type Gene snRNA snoRNA HACA box se http ribosome.miyazaki med.ac.jp , INFERNAL ss Predicted PFOLD release 10.0 Small nucleolar RNA SNORA69 also known as U69 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA69 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA69 is predicted to guide the pseudouridylation of U36 of 18S and U69 of 5.8S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00265 name Small nucleolar RNA SNORA69 http www snorna.biotoul.fr plus.php?id U69 snoRNAbase entry for U69 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA72

    Rfam box acc RF00139 description Small nucleolar RNA SNORA72 abbreviation SNORA72 avg length 122.70 avg identity 68.00 type Gene snRNA snoRNA HACA box se Griffiths Jones SR, INFERNAL ss Predicted PFOLD release 10.0 Small nucleolar RNA SNORA72 also known as U72 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA30 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA72 is predicted to guide the pseudouridylation of U55 of 5.8S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00139 name Small nucleolar RNA SNORA72 http www snorna.biotoul.fr plus.php?id U72 snoRNAbase entry for U72 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA70

    Rfam box acc RF00156 description Small nucleolar RNA SNORA70 abbreviation SNORA70 avg length 127.80 avg identity 63.00 type Gene snRNA snoRNA HACA box se Griffiths Jones SR, INFERNAL ss Predicted PFOLD release 10.0 Small nucleolar RNA SNORA70 also known as U70 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA70 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 issn ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA70 is predicted to guide the pseudouridylation of U1692 of 18S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00156 name Small nucleolar RNA SNORA70 http www snorna.biotoul.fr plus.php?id U70 snoRNAbase entry for U70 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA Me18S-Gm1358

    Rfam box acc RF00533 description Small nucleolar RNA Me18S Gm1358 abbreviation snoMe18S Gm1358 avg length 74.00 avg identity 72.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted Daub J release 10.0 Small nucleolar RNA Me18S Gm1358 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me18S Gm1358 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 18S G 1358 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00533 name Small nucleolar RNA Me18S Gm1358 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me18S-Um1356

    Rfam box acc RF00532 description Small nucleolar RNA Me18S Um1356 abbreviation snoMe18S Um1356 avg length 85.40 avg identity 70.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted ILM Moxon SJ release 10.0 Small nucleolar RNA Me18S Um1356 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me18S Um1356 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 18S U 1356 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00532 name Small nucleolar RNA Me18S Um1356 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Am2589

    Rfam box acc RF00529 description Small nucleolar RNA Me28S Am2589 abbreviation snoMe28S Am2589 avg length 107.30 avg identity 68.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted PFOLD Moxon SJ, Daub J release 10.0 Small nucleolar RNA Me28S Am2589 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Am2589 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S A 2589 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00529 name Small nucleolar RNA Me28S Am2589 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Am982

    Rfam box acc RF00535 description Small nucleolar RNA Me28S Am982 abbreviation snoMe28S Am982 avg length 71.80 avg identity 62.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted Daub J release 10.0 Small nucleolar RNA Me28S Am982 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Am982 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S A 982 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00535 name Small nucleolar RNA Me28S Am982 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Cm2645

    Rfam box acc RF00530 description Small nucleolar RNA Me28S Cm2645 abbreviation snoMe28S Cm2645 avg length 72.90 avg identity 80.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted PFOLD Moxon SJ, Daub J release 10.0 Small nucleolar RNA Me28S Cm2645 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Cm2645 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S C 2645 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00530 name Small nucleolar RNA Me28S Cm2645 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Cm3227

    Rfam box acc RF00536 description Small nucleolar RNA Me28S Cm3227 abbreviation snoMe28S Cm3227 avg length 81.60 avg identity 80.00 type Gene snRNA snoRNA CD box se PMID 15987805 INFERNAL ss Predicted Daub J release 10.0 Small nucleolar RNA Me28S Cm3227 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Cm3227 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S C 3227 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00536 name Small nucleolar RNA Me28S Cm3227 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Cm788

    Rfam box acc RF00539 description Small nucleolar RNA Me28S Cm788 abbreviation snoMe28S Cm788 avg length 72.50 avg identity 84.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted ILM Daub J release 10.0 Small nucleolar RNA Me28S Cm788 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Cm788 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . This family is predicted to direct the 2 O methylation of 28S C 788 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00539 name Small nucleolar RNA Me28S Cm788 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Gm1083

    Rfam box acc RF00528 description Small nucleolar RNA Me28S Gm1083 abbreviation snoMe28S Gm1083 avg length 89.10 avg identity 87.00 type Gene snRNA snoRNA CD box se PMID 15987805 , INFERNAL ss Predicted Daub J release 10.0 Small nucleolar RNA Me28S Gm1083 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Gm1083 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S G 1083 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00528 name Small nucleolar RNA Me28S Gm1083 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Gm3113

    Rfam box acc RF00531 description Small nucleolar RNA Me28S Gm3113 abbreviation snoMe28S Gm3113 avg length 83.30 avg identity 74.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted ILM Moxon SJ, Daub J release 10.0 Small nucleolar RNA Me28S Gm3113 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Gm3113 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S G 3113 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00531 name Small nucleolar RNA Me28S Gm3113 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-Gm3255

    Rfam box acc RF00527 description Small nucleolar RNA Me28S Gm3255 abbreviation snoMe28S G3255 avg length 82.60 avg identity 72.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted PFOLD Moxon SJ, Daub J release 10.0 Small nucleolar RNA Me28S Gm3255 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Gm3255 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S G 3255 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00527 name Small nucleolar RNA Me28S Gm3255 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA Me28S-U3344

    Rfam box acc RF00526 description Small nucleolar RNA Me28S U3344 abbreviation snoMe28S U3344 avg length 81.90 avg identity 77.00 type Gene snRNA snoRNA CD box se PMID 15987805 ss Predicted PFOLD Moxon SJ, Daub J release 10.0 Small nucleolar RNA Me28S Um3344 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA Me28S Um3344 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . It is predicted that this family directs 2 O methylation of 28S U 3344 ref cite journal last Huang first ZP coauthors Zhou H, He HL, Chen CL, Liang D, Qu LH year 2005 title Genome wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs journal RNA. volume 11 pages 1303&ndash 1316 pmid 15987805 doi 10.1261 rna.2380905 issue 8 pmc 1370813 ref . References reflist 1 External links Rfam id RF00526 name Small nucleolar RNA Me28S U3344 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA R20

    Rfam box acc RF00351 description Small nucleolar RNA R20 abbreviation snoR20 avg length 93.40 avg identity 79.00 type Gene snRNA snoRNA CD box se Moxon SJ, INFERNAL ss Predicted PFOLD Moxon SJ, Daub J release 10.0 Small nucleolar RNA R20 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA R20 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . Plant snoRNA R20 was identified in a screen of Arabidopsis thaliana ref name pmid11469857 cite journal author Barneche F, Gaspin C, Guyot R, Echeverr a M title Identification of 66 box C D snoRNAs in Arabidopsis thaliana extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2 O methylation sites journal J. Mol. Biol. volume 311 issue 1 pages 57 73 year 2001 pmid 11469857 doi 10.1006 jmbi.2001.4851 ref . References reflist 1 External links Rfam id RF00351 name Small nucleolar RNA R20 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA R21

    Rfam box acc RF00352 description Small nucleolar RNA R21 abbreviation snoR21 avg length 77.60 avg identity 71.00 type Gene snRNA snoRNA CD box se Moxon SJ, INFERNAL ss Predicted PFOLD Moxon SJ release 10.0 Small nucleolar RNA R21 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. snoRNA R21 belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified box C D snoRNPs are able to reproduce site specific 2 O methylation of target RNA in vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . Plant snoRNA R21 was identified in a screen of Arabidopsis thaliana ref name pmid11469857 cite journal author Barneche F, Gaspin C, Guyot R, Echeverr a M title Identification of 66 box C D snoRNAs in Arabidopsis thaliana extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2 O methylation sites journal J. Mol. Biol. volume 311 issue 1 pages 57 73 year 2001 pmid 11469857 doi 10.1006 jmbi.2001.4851 ref . References reflist 1 External links Rfam id RF00352 name Small nucleolar RNA R21 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details




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