- PupaSuite
PupaSuite is an interactive web based Single nucleotide polymorphism SNP analysis tool that allows for the selection of relevant SNPs within a gene , based on different characteristics of the SNP itself, such as validation status, type, frequency population data and putative functional properties pathological SNPs, SNPs disrupting potential transcription factor binding sites, intron exon boundaries... . Also, PupaSuite provides information about LD parameters based on genotype data from HapMap and identifies haplotype blocks and tag SNPs using the http www.broad.mit.edu mpg haploview Haploview program . PupaSuite operates with a collection of entries of dbSNP mapped to the Golden Path genome assembly , as implemented in human section of Ensembl http nar.oxfordjournals.org cgi content full 33 suppl 1 D447 Hubbard T. et al., 2005 . See also Bioinformatics biologically inspired computing Ensembl External links http pupasuite.bioinfo.cipf.es PupaSuite Category Bioinformatics software ... more details
|
Encyclopedia
top
