microarraydatabases are In order to keep this list short, please add new databases only if they are discussed ... of MicroarrayDatabases, see dmoz Science Biology Biochemistry and Molecular Biology Gene Expression Databases Gene Expression Databases See also Biological database DNA microarray DNA microarray Data warehousing genetics stub biology stub Category Microarrays Category Biological databases ...The term microarray database is usually used to describe a wikt repository repository containing DNA microarraymicroarray gene expression data. The key features of a microarray database are to store the measurement data, manage a searchable index, and make the data available to other applications for analysis and interpretation either directly, or via user downloads . Microarraydatabases can fall ..., or academic. These databases might have one or more of the following characteristics A subscription ... a standard, centralized repository for microarray data. See http www.med.yale.edu microarray ... public databases e.g. http www.bioinformatics.ubc.ca Gemma Gemma primarily uses Gene Expression Omnibus ... page, or instead add your favourite databases to the maintained list at the Open Directory Project, linked below. class wikitable sortable Database Scope Microarray experiment sets Sample profiles ... molecular abundance study 8094 205148 March 11, 2008 http smd.stanford.edu Stanford Microarray database private and published microarray and molecule abundance database 441 38925 March 27, 2009 https www.genevestigator.com Genevestigator database Manually curated microarray data for expression ... Sept. 1, 2007 https genome.unc.edu UNC Microarray database provides the service for microarray data ... nimblegen UNC modENCODE Microarray database Nimblegen customer 2.1 million array 6 180 July 17, 2009 ... for DNA microarray data generated by MUSC investigators as well as researchers in the global ... generated by microarray analysis within Ume Plant Science Centre UPSC . 100 ? November 15, 2007 ... more details
sisterlinks q no commons no species no s no n no A microarray is a multiplex assay multiplex lab on a chip . It is a 2D array on a Substrate materials science solid substrate usually a glass slide or silicon thin film cell that assays large amounts of biological material using high throughput screening methods. Types of microarrays include DNA microarray s, such as cDNA microarrays, oligonucleotide microarrays and SNP microarrays MMChip s, for surveillance of microRNA populations Protein microarray s Tissue microarray s Cellular microarray s also called transfection microarrays Chemical compound microarray s Antibody microarray s Carbohydrate array s glycoarrays Category Microarrays de Microarray nl microarray ja ur ... more details
about a detailed explanation of how a microarray experiment is done DNA microarray experiment more information about specific MicroarrayDatabasesMicroarraydatabases Image Microarray2.gif thumb 350px Example of an approximately 40,000 probe spotted oligo microarray with enlarged inset to show detail. For terminology, see DNA microarray Glossary glossary below. A DNA microarray is a multiplex assay .... Since an array can contain tens of thousands of probes, a microarray experiment can accomplish ... known as an Affy chip when an Affymetrix chip is used. Other microarray platforms, such as Illumina ... from other types of microarray only in that they either measure DNA or use DNA as part of its detection ... DNA microarray Uses and types uses and types section . Microarrays also differ in fabrication, workings, accuracy, efficiency, and cost see DNA microarray Fabrication fabrication section . Additional factors for microarray experiments are the experimental design and the methods of analyzing the data see DNA microarray Microarrays and bioinformatics Bioinformatics section . History Microarray technology ... monitoring of gene expression patterns with a complementary DNA microarray journal Science volume ... eukaryotic genome Saccharomyces cerevisiae on a microarray was published in 1997. ref name Lashkari ... to the probe Main Nucleic acid hybridization Details DNA microarray experiment KEEP SECTION ... is sequenced allowing an absolute measurement. Citation needed date October 2009 File Microarray exp horizontal.svg thumb 900px none The step required in a microarray experiment Uses and types ... on a single DNA microarray. The alternative bead array is a collection of microscopic polystyrene .... For example, microarray based gene expression profiling can be used to identify genes whose ... detection, mostly combining PCR and microarray technology. ChIP on chip Chromatin immunoprecipitation ... to a microarray such as a tiling array allowing the determination of protein binding site occupancy ... more details
Image Tissue MicroArray Block.jpg 215px thumb right A Tissue MicroArray Block Image rob7 melanoma.jpg 215px thumb right 0.6 mm core Tissue MicroArray Block Image Tissue MicroArray Slide.jpg 215px thumb right A Tissue MicroArray Section Tissue biology Tissue microarrays also TMA s consist of paraffin blocks in which up to 1000 ref http tissuearray.org yale tisarray.html Yale University Core Tissue MicroArray Facility ref separate Biological tissue tissue cores are assembled in array fashion to allow multiplex assay multiplex Histology histological analysis . History The major limitations in molecular Clinical research clinical analysis of tissues include the cumbersome nature of procedures, limited availability of medical diagnosis diagnostic reagents and limited patient sample size. The technique of tissue microarray was developed to address these issues. Multi tissue blocks were first introduced by H. Battifora in 1986 with his so called multitumor sausage tissue block and modified in 1990 with its improvement, the checkerboard tissue block . In 1998, J. Kononen and collaborators developed the current technique, which uses a novel sampling approach to produce tissues of regular size and shape that can be more densely and precisely arrayed. Procedure In the tissue microarray technique, a hollow needle is used to remove tissue cores as small as 0.6 mm in diameter from regions of interest ... by any method of standard histological analysis. Each microarray block can be cut into 100 500 sections, which can be subjected to independent tests. Tests commonly employed in tissue microarray ... useful in analysis of cancer samples. See also Cytomics MicroArray and Gene Expression MAGE .... External links http tissuearray.org Yale University Core Tissue MicroArray Facility http tmalab.jhmi.edu Johns Hopkins University Tissue MicroArray Facility https cbio.mskcc.org tma Memorial Sloan Kettering Cancer Center Tissue MicroArray Software http bioitalliance.org blogs ocimum archive 2007 10 ... more details
refimprove date June 2008 Image Antibody microarray.jpg thumb right 300 px Samples of antibody microarray creations and detections. An antibody microarray is a specific form of protein microarray s, a collection of capture antibodies are spotted and fixed on a solid surface, such as glass, plastic and silicon chip for the purpose of detecting antigens. Antibody microarray is often used for detecting protein expression s from cell lysate s in general research and special biomarker s from blood plasma serum or urine for diagnostic applications. ref name pmid18837515 cite journal author Rivas LA, Garc a Villadangos M, Moreno Paz M, Cruz Gil P, G mez Elvira J, Parro V title A 200 antibody microarray biochip for environmental monitoring searching for universal microbial biomarkers through immunoprofiling journal Anal. Chem. volume 80 issue 21 pages 7970 9 year 2008 month November pmid 18837515 doi 10.1021 ac8008093 ref ref name pmid18370316 cite journal author Chaga GS title Antibody arrays for determination of relative protein abundances journal Methods Mol. Biol. volume 441 issue pages 129 51 year 2008 pmid 18370316 doi 10.1007 978 1 60327 047 2 9 ref Background The theoretical background for protein microarray based ligand binding assays was initially developed by Ekins et al. in the late 1980s. ref name pmid9733000 cite journal author Ekins RP title Ligand assays from electrophoresis to miniaturized microarrays journal Clin. Chem. volume 44 issue 9 pages 2015 30 year 1998 month September pmid 9733000 doi url http www.clinchem.org cgi pmidlookup?view long&pmid 9733000 ref According ... immobilized in a 2D addressable grid on a chip. Protein microarray biochips extract and retain targets ... spatially distinct elements within a total area of 1 cm sup 2 sup . See also ELISA protein microarray DNA microarray tissue microarray chemical compound microarray References Reflist External links http www.biosims.fr en home BioSIMS Microarrays DEFAULTSORT Antibody Microarray Category Microarrays ... more details
A protein microarray , sometimes referred to as a protein binding microarray , provides a multiplex assay multiplex approach to identify protein protein interactions, to identify the substrates of protein kinase s, to identify transcription factor protein activation, or to identify the targets of biologically active small molecules. The array is a piece of glass on which different molecules of protein or specific DNA binding sequences as capture probes for the proteins have been affixed at separate locations in an ordered manner thus forming a microscopic array. The most common protein microarray is the antibody microarray , where antibodies are spotted onto the protein chip and are used as capture molecules to detect proteins from cell lysate solutions. Related microarray technologies also include DNA microarray s, cellular microarray s, antibody microarray s, tissue microarray s and chemical compound microarray s. Applications Protein microarrays also biochip , proteinchip are measurement devices used in biomedical applications to determine the presence and or amount referred to as relative quantitation of proteins in biological samples, e.g. blood . They have the potential to be an important tool for proteomics research. Usually a multitude of different capture agents, most frequently monoclonal antibodies , are deposited on a chip surface glass or silicon in a miniature array. This format is often also referred to as a microarray a more general term for chip based biological ... is compatible with standard microarray scanners, the spots on the resulting image can be quantified by commonly used microarray quantification software packages. However, some minor alterations ... Antibody microarray Cellular microarray Chemical compound microarray DNA microarray Tissue microarrayMicroArray and Gene Expression MAGE Cell free protein array Software source code Many software Packages ... Application area proteinarray.aspx Software for analyzing protein microarray data with instant ... more details
A cellular microarray , is a laboratory tool that allows for the multiplex assay multiplex interrogation of living cell biology cells on the surface of a solid support. The support, sometimes called a chip , is spotted with varying materials, such as antibodies , proteins , or lipids , which can interact with the cells, leading to their capture on specific spots. Combinations of different materials can be spotted in a given area, allowing not only cellular capture, when a specific interaction exists, but also the triggering of a cellular response, change in phenotype , or detection of a response from the cell, such as a specific secretion secreted factor. An example of cellular microarrays are PMHC Cellular Microarrays . Cellular microarrays were developed by Daniel Chen, Yoav Soen, Dan Kraft, Patrick Brown and Mark Davis at Stanford University Medical Center . References Chen DS, Davis MM 2006 Molecular and functional analysis using live cell microarrays. Curr Opin Chem Biol 10 28 34 Chen DS, Soen Y, Stuge TB, Lee PP, Weber JS, Brown PO, Davis MM 2005 Marked Differences in Human Melanoma Antigen Specific T Cell Responsiveness after Vaccination Using a Functional Microarray. PLoS Med 2 10 e265 http medicine.plosjournals.org perlserv ?request get document&doi 10.1371 2Fjournal.pmed.0020265 Soen Y., Chen D. S., Kraft D. L., Davis M. M. and Brown P.O. 2003 Detection and characterization of cellular immune responses using peptide MHC microarrays. PLoS Biol. 1 E65 http biology.plosjournals.org perlserv ?request get document&doi 10.1371 journal.pbio.0000065 Chen DS, Davis MM 2005 Cellular immunotherapy Antigen recognition is just the beginning. Springer Semin Immunopathol 27 119 127 Chen DS, Soen Y, Davis MM, Brown PO 2004 Functional and molecular profiling of heterogeneous tumor samples using a novel cellular microarray. J Clin Oncol 22 9507 http meeting.jco.org cgi content ... microarray identifies functional deficiences in tumor specific T cell responses. J Clin Oncol 22 2510 ... more details
DeZign for Databases is a database design and data modeling tool for multiple database platforms Oracle Database Oracle , MySQL , IBM DB2, PostgreSQL , MS SQL Sever, MS Access, ... . It can be used to create, maintain and document new or existing database systems. The tool uses Entity relationship diagram . Similar tools are Embarcadero ER Studio , IBM Data Architect, Oracle Designer and Sybase PowerDesigner . History DeZign for Databases was created by Heraut Solutions in 1998. Later the company name was changed to Datanamic. DeZign for Databases was the first modeling tool to support MySQL . Support for more databases was added in the late nineties. About 20 databases are supported in the 2008 version of the tool. See also Computer aided software engineering Relational Model Data modeling RDBMS External links http www.datanamic.com dezign Official website http www.datanamic.com support lt dez005 introduction db modeling.html Introduction to database design Category Databases Category Data modeling tools ... more details
There are a number of databases that psychologists use to access the knowledgebase of their science. They include MEDLINE PubMed PsycINFO PsycARTICLES PsycFIRST PsycSCANs Online PsycSCAN Applied Psychology PsycSCAN Behavior Analysis & Therapy PsycSCAN Developmental Psychology PsycSCAN LD MR PsycSCAN Psychopharmacology Cochrane Library CINAHL EMBASE Psychological Abstracts PsycLit Ulrich International Periodical Directory , PUBLIST The Internet Directory Publications , ISSN International , PSICODOC , PSEDISOC , the ISOC database CSIC RISO , CIRBIC REVISTAS , COMPLUDOC Institute for Scientific Information Thomson ISI Science Citation Index Social Sciences Citation Index Category Psychology lists ... more details
Glass databases are a collection of glass compositions, glass properties, glass model s, associated trademark names, patent s etc. These data were collected from publications in scientific papers and patents, from personal communication with scientists and engineers, and other relevant sources. History Since the beginning of scientific glass research in the 19 sup th sup century thousands of glass property composition datasets were published. The first attempt to summarize all those data systematically was the monograph Glastechnische Tabellen . ref Glastechnische Tabellen engl. Glass Technical Tables , edited by W. Eitel, M. Pirani, and K. Scheel, Springer Verlag, Berlin, 1932 ref World War II and the Cold War prevented similar efforts for many years afterwards. In 1956 Phase Diagrams for Ceramists was published the first time, containing a collection of phase diagram s. ref Levin, E.M., McMurdie, H.F., and Hall, F.P., Phase Diagrams for Ceramists Volume 1, The American Ceramic Society, Columbus, Ohio, p. 6, 1956. ref This database is known today as Phase Equilibria Diagrams . ref http www.ceramics.org phase Phase Equilibria Diagrams Database ref In 1991 the Japanese database Interglad was created, ref http www.newglass.jp interglad 6 gaiyo info e.html INTERGLAD ref followed by the publication of the Handbook of Glass Data in 1993. ref Handbook of Glass Data , edited by O. V. Mazurin, M. V. Streltsina, and T. P. Shvaiko Shvaikovskaya, Elsevier, 1993 ref The Handbook of Glass Data was later digitalized and substantially expanded under the name SciGlass . ref http www.sciglass.info SciGlass ref Currently, SciGlass contains properties of about 300,000 glass compositions, INTERGLAD .... For full features see the references section below. All databases contain citations to the original ... of glass databases Experimental planning, expected properties and appropriate glass compositions ... engineering and science Category Glass chemistry Category Databases Category Ceramic materials ... more details
Dablink This article deals with the term directory with respect to a computer database . The term also commonly refers to a Directory file systems folder in a computer file system . Unreferenced date April 2007 Merge Directory service date September 2009 Generally, a directory , as used in computing and telephony , refers to a digital library repository or database of information which is heavily optimized for reading, under the assumption that data updates are very rare compared to data reads. Commonly, a directory supports search and browsing in addition to simple lookups. A website which offer access to a categorized listing of other websites optimized for lookup, search, or browsing is a directory, a web directory . The Open Directory Project is an example of a web directory. Directory technology is often used in White pages white page applications and network information services. WHOIS is a prominent example of directory service providing white pages. The Domain Name System DNS is a prominent example of directory service providing a network information service. DNS is also an example of a Distributed computing distributed hierarchical directory service that only has simple lookup capabilities. The X.500 and Lightweight Directory Access Protocol LDAP directory services are examples of general purpose distributed hierarchical object oriented directory technologies. Both offer complex searching and browsing capabilities and are used for white pages, network information services, public key infrastructure , and a wide range of other applications. See also Database Directory service Reference works Web directory RSS directory DEFAULTSORT Directory Databases Category Databases Category Reference works ... more details
Systems , Addison Wesley, ISBN 0 201 54263 3 Neil Matthew , Richard Stones Beginning Databases ... Cursors in DB2 SQL stored procedures Databases DEFAULTSORT Cursor Databases Category Database ... more details
Image Microarray2.gif thumb 350px Example of an approximately 40,000 probe spotted oligo microarray with enlarged inset to show detail. Microarray analysis techniques are used in interpreting the data generated from experiments on DNA, RNA, and protein microarray s, which allow researchers to investigate the expression state of a large number of genes in many cases, an organism s entire genome in a single experiment. Such experiments generate a very large volume of genetic data that can be difficult to analyze, especially in the absence of good gene annotation. Introduction Microarray data analysis ... science centers toxicoinformatics maqc title MicroArray Quality Control MAQC Project accessdate 2007 ... ref Creating raw data Most microarray manufacturers, such as Affymetrix and Agilent ref cite web url ... with microarray equipment such as plate readers. Background correction Depending on the type of array ... spots. ref cite web url http bioinf.wehi.edu.au limma title LIMMA Library Linear Models for Microarray ... Lim WK, Wang K, Lefebvre C, Califano A title Comparative analysis of microarray normalization procedures ... i282 8 year 2007 pmid 17646307 doi 10.1093 bioinformatics btm201 ref Factor Analysis for Robust Microarray ... Shi L, Reid LH, Jones WD, et al. title The MicroArray Quality Control MAQC project shows inter ... microarray platforms journal Nat. Biotechnol. volume 24 issue 9 pages 1162 9 year 2006 pmid 17061323 ... from one or several microarray experiments. A wide variety of microarray analysis tools are available ... module and other microarray tools ref cite web url http www stat.stanford.edu tibs SAM title Significance ... tools for statistical analysis to determine the extent of over or under expression of a gene in a microarray ... information on the genes or gene sets of interest, including links to entries in databases such as NCBI s GenBank and curated databases such as Biocarta ref cite web url http www.biocarta.com title ... farms farms.html FARMS Factor Analysis for Robust Microarray Summarization, an R package &mdash ... more details
The MicroArray and Gene Expression MAGE group is a project of the FGED Society to develop a standard for the representation of gene expression data from DNA microarray microarrays to facilitate the exchange of information between different data systems. ref cite web url http www.mged.org mage title MAGE Project homepage work FGED Society website accessdate 2008 11 23 ref MAGE has in the past worked with the OMG Object Management Group , which provided a framework for developing, ratifying, and publishing the MAGE based standards documents. The MAGE standards include a data exchange model MAGE OM Microarray Gene Expression Object Model and data exchange formats MAGE ML Microarray Gene Expression Markup Language MAGE TAB Microarray Gene Expression Tabular format for microarray expression experiments. See also LSID Life Science Identifier DNA Microarray FGED Society SDRF Strand Life Sciences Genespring References references bioinformatics stub Category Standards organizations Category Microarrays ... more details
Orphan date November 2006 Methylation specific oligonucleotide microarray was developed as a technique to map methylation changes in DNA in cancer . This technique was developed by Professor Tim Hui Ming Huang and was published in journal Genome Research on 2002 Gitan et al., 2002 . The method utilizes bisulfite modified DNA that is used as templates for PCR amplification , which is subsequently hybridized to oligonucleotide microarray. External links Commons Methylation specific oligonucleotide microarray http www.epigeneticstation.com Resources, information and specific protocols for DNA Methylation Analysis Category Oncology Category Microarrays genetics stub medicine stub ... more details
Orphan date February 2009 A DNA gene expression microarray is a process that allows thousands of pieces of DNA that are fixed to a glass slide to be analyzed at one time. It is used to identify the genes pieces of DNA in specific cells or tissue that are actively used to make RNA , which then may be used to make protein s. External links http www.cancer.gov Templates db alpha.aspx?CdrID 561396 DNA gene expression microarray entry in the public domain NCI Dictionary of Cancer Terms NCI cancer dict med stub Category Microarrays ... more details
Image Microarray.svg thumb 300px steps involved in a microarray experiment some steps omitted For DNA microarrays in general DNA microarray This is an example of a DNA microarray experiment , detailing a particular case to better explain DNA microarray experiments, while enumerating possible alternatives. The two samples to be compared pairwise comparison are grown acquired. In this example treated sample Case control case and untreated sample Case control control . The nucleic acid of interest is purified this can be all RNA for expression profiling , DNA for comparative hybridization , or DNA RNA bound to a particular protein which is immunoprecipitated ChIP on chip for Epigenetics epigenetic or regulation studies. In this example total RNA is isolated total as it is nuclear and cytoplasm ic by Guanidinium thiocyanate phenol chloroform extraction e.g. Trizol which isolates most RNA whereas column methods have a cut off of 200 nucleotides and if done correctly has a better purity. The purified ... amplify all RNA which is mostly rRNA , MicroRNA miRNA microarray ligate an oligonucleotide to the purified ... depends on the microarray, which means that if the label is added with the RT mix, the cDNA is on the template ... hole in a microarray, which can be a gene chip holes in the back or a glass microarray which is bound .... The holes are sealed and the microarray hybridized, either in a hyb oven, where the microarray is mixed by rotation, or in a mixer, where the microarray is mixed by alternating pressure at the pinholes. After an overnight hybridization, all nonspecific binding is washed off SDS and SSC . The microarray ..., in situ synthesised short oligonucleotides . See also DNA microarray Microfluidics or lab on chip ... content labs microarray DNA microarray virtual experiment Molecular Biology References ... Press. Lab protocols found on microarray labs http www.microarrays.ca support proto.html http www.daf.jhmi.edu microarray protocols.htm http dms.dartmouth.edu dgml background http www.hpcgg.org ... more details
A chemical compound microarray is a collection of organic chemical compounds spotted on a solid surface, such as glass and plastic. This microarray format is very similar to DNA microarray , protein microarray and antibody microarray . In chemical genetics research, they are routinely used for searching proteins that bind with specific chemical compounds, and in general drug discovery research, they provide a multiplex assay multiplex way to search potential drugs for therapeutic targets. There are three different forms of chemical compound microarrays based on the fabrication method. The first form is to covalently immobilize the organic compounds on the solid surface with diverse linking techniques this platform is usually called small molecule Small Molecule Microarray, which is invented and advanced by Dr. Stuart Schreiber and colleagues http cgr.harvard.edu macbeath research small mol.html . The second form is to spot and dry organic compounds on the solid surface without immobilization, this platform has a commercial name as Micro Arrayed Compound Screening ARCS , which is developed by scientists in Abbott Laboratories http jbx.sagepub.com cgi content abstract 9 1 12 . The last form is to spot organic compounds in a homogenous solution without immobilization and drying effect, this platform is developed by Dr. Scott Diamond http www.seas.upenn.edu diamond and later commercialized as DiscoveryDot technology by Reaction Biology Corporation http www.reactionbiology.com . Polymer Microarrays Polymer microarrays have been developed to allow screening for new polymeric materials to direct different tissue lineages. Research has also been directed towards studying the surface ... Kinase Profiling.jpg thumb DiscoveryDot Microarray for Kinase Profiling References Uttamchandani ..., H. et al. 2005 Nanoliter Homogenous Ultra High Throughput Screening Microarray for Lead Discoveries ... content refs 11 1 48 . Ma, H. and Horiuchi, K.Y. 2006 Chemical Microarray a new tool for drug screening ... more details
PMHC cellular microarrays are a type of cellular microarray that has been spotted with pMHC complexes peptide MHC class I or peptide MHC class II . These biochips can be used to interrogate immune cells, particularly antigen specific T cell s, from clinical samples for what they are capable of recognizing. They can also be co spotted with other molecules, such as antibodies that capture cytokines, allowing for high throughput functional analysis of the captured T cells. Molecules spotted on a pMHC cellular microarray can be classified as capture molecules, detector molecules and effector molecules. They were developed by Daniel Chen, Yoav Soen, Dan Kraft, Pat Brown and Mark Davis at Stanford University Medical Center . References Chen DS, Davis MM 2006 Molecular and functional analysis using live cell microarrays. Curr Opin Chem Biol 10 28 34 Chen DS, Soen Y, Stuge TB, Lee PP, Weber JS, Brown PO, Davis MM 2005 Marked Differences in Human Melanoma Antigen Specific T Cell Responsiveness after Vaccination Using a Functional Microarray. PLoS Med 2 10 e265 http medicine.plosjournals.org perlserv ?request get document&doi 10.1371 2Fjournal.pmed.0020265 Soen Y., Chen D. S., Kraft D. L., Davis M. M. and Brown P.O. 2003 Detection and characterization of cellular immune responses using peptide MHC microarrays. PLoS Biol. 1 E65 http biology.plosjournals.org perlserv ?request get document&doi 10.1371 journal.pbio.0000065 Chen DS, Davis MM 2005 Cellular immunotherapy Antigen recognition is just the beginning. Springer Semin Immunopathol 27 119 127 Soen Y, Chen DS, Stuge TB, Weber JS, Lee PP, et al. 2004 A novel cellular microarray identifies functional deficiences in tumor specific T cell responses. J Clin Oncol 22 2510 Category Microarrays ... more details
also Cancer Research List of biological databasesMicroarraydatabases Oncogenomics Oncology Notes references group note Category Applied genetics Category Bioinformatics Category Biological databases ...The academia has already brought up several databases dedicated to cancer data and oncogenomics oncogenomic research . They can be a primary source of cancer data, offer a certain level of analysis processed data or even offer online data mining . This table gives an overview over databases for that serve specifically for oncogenomic research. Note that this is not a comprehensive list and does not contain databases that have a generic focus. You may find databases containg cancer data among the List of biological databases or Microarraydatabases . border 1 cellpadding 1 class wikitable sortable style width 100 font size 95 width 20 Database width 17 Institute Organization width 21 Alteration Types width 6 Primary Source ref group t The database is the publication site for some of its cancer raw data ref width 6 Processed Data ref group t The database contains cancer data at a certain level of analysis non raw data ref width 7 Organisms width 6 Cell lines ref group t The database also contains cell line data ref width 6 Public Data ref group t The database contains cancer data that is available for everyone ref width 6 Restricted Data ref group t The database contains cancer data that is only available under some restriction ref span id C span Cosmic cancer database Catalogue Of Somatic Mutations In Cancer COSMIC http www.sanger.ac.uk genetics CGP cosmic Wellcome Trust Sanger Institute , UK Mutation no yes Human no yes no span id I span International Cancer Genome Consortium http www.icgc.org World Worldwide Copy number , Mutation , Gene Expression yes yes Human no yes yes span id I span IntOGen Integrative Oncogenomics Cancer Browser IntOGen http www.intogen.org Universitat Pompeu Fabra , Spain Copy number , Mutation , Gene Expression no yes Human no yes no span id M span ... more details
Bioinformatics Institute EBI , Gene Ontology Consortium Microarraydatabases main Microarraydatabases ... Microarray Database SMD Stanford University Mathematical model databases Biomodels Database http ...cleanup date January 2011 external links date November 2010 wikify date November 2010 Biological databases ... A title Databases, data tombs and dust in the wind. journal Bioinformatics volume 24 issue 19 pages 2127 8 year 2008 pmid 18819940 ref Primary sequence databases The International Nucleotide Sequence ... of the following databases. http www.ddbj.nig.ac.jp Welcome e.html DDBJ DNA Data Bank of Japan http ... databases, DDBJ Japan , GenBank USA and EMBL Nucleotide Sequence Database Europe , are repositories for nucleotide primary structure sequence data from all organism s. All three databases accept ... optimal synchronisation between them. These three databases are primary databases, as they house original sequence data. Metadatabases Strictly speaking a metadatabase can be considered a database of databases ... mGen containing four of the world biggest databases GenBank, Refseq, EMBL and DDBJ easy and simple ... contributed database of biological databases. ConsensusPathDB A molecular functional interaction database, integrating information from 12 other databases. http pathogenportal.org portal portal PathPort ... by the National Institute of Allergy and Infectious Diseases NIAID Genome databases These databases ... curation of experimental literature to improve computed annotations. These databases may hold many species ... of the model organism E. coli K 12 Ensembl provides automatic annotation databases for human, mouse ... Joint Genome Institute provides databases of many eukaryote and microbial genomes. http www.nmpdr.org ... for Invertebrate Vectors of Human Pathogens Protein sequence databases UniProt http www.uniprot.org ... Protein structure databases Protein Data Bank http www.rcsb.org pdb PDB Research Collaboratory ... Protein model databases http swissmodel.expasy.org SWISS MODEL.html SWISS MODEL Server and Repository ... more details
Merge List of genealogy portals date March 2010 This is a list of genealogy databases and online resources that are not specifically restricted to a particular place, family set, or time period in their content. Dynamic list FamilySearch , a database developed by The Church of Jesus Christ of Latter day Saints . Rodovid , Global genealogy, over 19 language. FreeBMD , an online searchable partial index of births, marriages, and deaths in England & Wales from 1837 based on General Register Office records. http www.lklundin.dk gedcomp english.php GEDCOMP , Automated, free GEDCOM COMParison mostly related to Denmark . ref cite news date 2004 04 22 accessdate 2009 01 14 url http query.nytimes.com gst fullpage.html?res 9807E3D8163AF931A15757C0A9629C8B63&sec &spon &pagewanted print title From Shared Resources, Your Personal History author Peter Wayner work The New York Times ref GeneaNet , an international genealogy database. Hindu genealogy registers at Haridwar , India , microfilmed at the Genealogical Society of Utah GSU , USA. MyHeritage Research, an aggregated search system covering a large number of genealogy databases. http sortedbyname.com SortedByName Millions of entries from transcription projects, sorted alphabetically and by Soundex, with links to their respective transcription project sites. Comparison of notable databases for uploading family trees Some of these also have social network ing features. class sortable wikitable Web site Alexa Internet Alexa traffic rank ref name Alexa Traffic rank according to http www.alexa.com siteinfo ancestry.com rodovid.org familysearch.org geneanet.org geni.com trafficstats alexa.com March 2010. Low number indicate high popularity. ref class unsortable Free functionality class unsortable Functionality for paying subscribers ancestry.com 911 Multilanguage user interface. MyHeritage 2336 Multilanguage user interface. geni.com 6002 ... reflist Category Genealogy websites Databases de Genealogie Datenbank ... more details
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