The Integrated Microbial Genomes http img.jgi.doe.gov IMG is a genome browsing and annotation system developed by the DOE Joint Genome Institute . IMG contains all the draft and complete microbial genomes sequenced by the DOE JGI integrated with other publicly available genomes including Archaea, Bacteria, Eukarya, Viruses and Plasmids . IMG provides a set of tools for comparative analysis of genes, genomes and functions. Users can employee a set of powerful tools for comparative analysis and explore the microbial genomes along its 3 main dimensions genomes, genes and functions , select them and transfer them in the comparative analysis carts. Users can also type or upload their own gene annotations called MyIMG gene annotations and the IMG system will allow them to generate Genbank or EMBL format files containing these annotations. For a tutorial on on how to use the system visit http www.openhelix.com downloads img img home.shtml OpenHelix The Integrated Microbial Genomes with Microbiome Samples http img.jgi.doe.gov m IMG M system is an extension of the IMG system providing a comparative analysis context of metagenomic data with the publicly available isolate genomes. The Integrated Microbial Genomes Expert Review http img.jgi.doe.gov er IMG ER system provides support to individual scientists or group of scientists for functional annotation and curation of their microbial genomes of interest. Users can submit their annotated genomes or request the IMG automated annotation pipeline to be applied first into IMG ER and proceed with manual curation and comparative analysis in the system, through secure password protected access. External links and sources http img.jgi.doe.gov IMG home page reference http nar.oxfordjournals.org cgi content abstract 34 suppl 1 D344 Nucleic Acids ... genomes lproks.cgi NCBI Microbial Genomes http cmr.jcvi.org TIGR Comprehensive Microbial ... Category Biological databases es Integrated Microbial Genomes System ... more details
Announced in 2008, shortly after the human 1000 Genomes Project , the 1000 Plant Genomes Project is another ... 1000 genomes project for example, aims to obtain high genome coverage of 1000 individual people to better ... or chloroplast DNA ref name fourb http www.ncbi.nlm.nih.gov genomes PLANTS PlantList.html, Retrieved Feb. 25, 2010 ref rather than the actual genomic DNA of the plants. The 1000 Plant Genomes Project ... alignment figure 1 to improve their certainty. Biotechnology applications The list of plant genomes ... genomic features that are not part of the coding sequence. Based on the few whole plant genomes ... large genome wide changes through duplication of the whole genome. The rice and the wheat genomes, for example, can have 4 6 copies of whole genomes ref name fourteen Taxonomy of wheat wheat whereas ... to the 1000 Genomes Project Similarities Just as the Beijing Genomics Institute in Shenzhen, China is one of the major genomics centers involved in the 1000 Genomes Project, the institute is the site of sequencing for the 1000 Plant Genomes Project. ref name sixteen http www.genomeweb.com sequencing bgi seeks proposals sequence 1000 plant animal genomes pledges 100m toward effor, Retrieved ... different. While the 1000 Genomes Project focuses on genetic variation in a single species, the 1000 Plant Genomes Project looks at the evolutionary relationships and genes of 1000 different plant species. While the 1000 Genomes Project has been initially estimated to cost up to 50 million USD, ref name two the 1000 Plant Genomes Project will likely not be as expensive the difference in cost comes from the target sequence in the genomes. ref name onekp Since the 1000 Plant Genomes Project will only ... to the 1000 Genomes Project, the non coding portions of the genomes excluded in the 1000 Plant Genomes ... approach of the 1000 Plant Genomes Project minimizes cost while still achieving its goals. Funding ... million to large scale sequencing projects of plants and animals including the 1000 Plant Genomes ... more details
The 1000 Genomes Project , launched in January 2008, is an international research effort to establish by far the most detailed catalogue of human genetic variation . Scientists plan to DNA sequencing sequence the genome s of at least one thousand anonymous participants from a number of different ethnic groups within the next three years, using newly developed technologies which are faster and less expensive. In 2010, the project finished its pilot phase, which was described in detail in a publication in Nature ref The 1000 Genomes Project Consortium, A map of human genome variation from population scale sequencing, Nature 2010 467, 1061 1073 http www.nature.com nature journal v467 n7319 full nature09534.html ref . As of late 2010, the project is in its production phase with a target of sequencing upwards of 2000 individuals. The project unites multidisciplinary research teams from institutes around the world, including the United Kingdom , China and the United States . Each will contribute to the enormous sequence dataset and to a refined Human Genome Project human genome map , which will be freely accessible through public databases to the scientific community and the general public ... Spencer, International Consortium Announces the 1000 Genomes Project, EMBARGOED 2008 http www.1000genomes.org ... these two types of genetic variants lies a significant gap of knowledge, which the 1000 Genomes Project ... are planning to sequence a minimum of 1,000 human genomes. Due to the large amount of sequence ... year production phase. This equates to more than two human genomes every 24 hours a groundbreaking capacity ... 2x . For the second pilot study, the genomes of two nuclear families both parents and an adult ... Genomes Project will then use samples from volunteer donors. The following populations will be included ... Genomes Project External links http www.1000genomes.org 1000 Genomes A Deep Catalog of Human Genetic ... reflist 2 DEFAULTSORT 1000 Genomes Project, The Category Biology Category Genetics Category Genomics ... more details
This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequence s that have been assembled, annotated and deposited in public databases. Archea are of particular interest for biotechnology since they can exist under extreme conditions. class wikitable sortable Sequenced Archaeal Genomes Species Strain biology Strain base pair Base Pair s Gene s Reference Aeropyrum pernix K1 1,669,695 2,694 ref cite journal last1 Kawarabayasi first1 Y. title Complete Genome Sequence of an Aerobic Hyper thermophilic Crenarchaeon, Aeropyrum pernix K1 journal DNA Research volume 6 pages 83 101, 145 52 year 1999 doi 10.1093 dnares 6.2.83 pmid 10382966 ref Archaeoglobus Archaeoglobus fulgidus fulgidus DSM4304 2,178,400 2,407 ref cite journal last1 Venter first1 J. Craig last2 Klenk first2 Hans Peter last3 Clayton first3 Rebecca A. last4 Tomb first4 Jean Francois last5 White first5 Owen last6 Nelson first6 Karen E. last7 Ketchum first7 Karen A. last8 Dodson first8 Robert J. last9 Gwinn first9 Michelle title The complete genome sequence of the hyperthermophilic, sulphate reducing archaeon Archaeoglobus fulgidus. journal Nature volume 390 issue 6658 pages 364 70 year 1997 pmid 9389475 doi 10.1038 37052 ref Haloarcula Haloarcula marismortui marismortui ATCC43049 3,131,724 3,131 ref cite journal last1 Baliga first1 N. S. last2 Bonneau first2 R last3 Facciotti first3 MT last4 Pan first4 M last5 Glusman first5 G last6 Deutsch first6 EW last7 Shannon first7 P last8 Chiu first8 Y last9 Weng first9 RS title Genome sequence of Haloarcula marismortui ... from the Pyrococcus genomes journal Journal of Molecular Biology volume 297 issue 4 pages 895 906 ... of sequenced eukaryotic genomes List of sequenced prokaryotic genomes List of sequenced plastomes References reflist External links http www.genomesonline.org GOLD Genomes OnLine Database v 2.0 http supfam.org SUPERFAMILY SUPERFAMILY comparative genomics database Includes genomes of completely sequenced ... more details
This list of sequenced eubacterial genomes contains all the Bacteria eubacteria known to have publicly available complete genome sequence s. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration , a public database which can be searched ref name EntrezG cite web url http www.ncbi.nlm.nih.gov sites entrez?db genome title Entrez Genome Database Search publisher National Center for Biotechnology Information Search for details on specific genomes by organism name and strain. ref on the World Wide Web web . A few of the listed genomes may not be in the INSDC database, but in other public databases Verify source date July 2008 . Genomes listed as Unpublished are in a database, but not in the peer review peer reviewed scientific literature. For the genomes of archaea see list of sequenced archaeal genomes . class wikitable sortable Sequenced Bacterial Genomes Species Strain Type Base Pairs Genes Reference Acidobacteria bacterium Ellin345 Acidobacteria 5,650,368 4,777 Unpublished ref name EntrezG Acinetobacter sp. ADP1 Proteobacteria Gammaproteobacteria 3,598,621 3,325 ref cite journal journal Nucleic Acids Res volume 32 pages 5766 79 year 2004 author Barbe V et al. title Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium url http nar.oxfordjournals.org cgi pmidlookup?view long&pmid 15514110 pmid 15514110 doi 10.1093 nar gkh910 issue 19 pmc 528795 ref Agrobacterium tumefaciens C58 Proteobacteria Alphaproteobacteria 2,841,581 2,722 ref cite journal journal ... comparative analysis of reduced genomes url http www.pnas.org cgi pmidlookup?view long&pmid 12886019 ... similar genomes of Brucella melitensis and Brucella suis url http jb.asm.org cgi pmidlookup?view ... mechanisms from the genomes of multiple campylobacter species url http biology.plosjournals.org ... Comparative genomes of Chlamydia pneumoniae and C. trachomatis doi 10.1038 7716 pmid 10192388 issue ... more details
unreferenced date December 2010 The genomic signature refers to the characteristic frequency of oligonucleotide s in a genome or sequence. It has been observed that the genomic signature of phylogenetically related genomes is similar. DEFAULTSORT Genomic Signature Category Nucleic acids ... more details
Unreferenced stub auto yes date December 2009 Orphan date February 2009 Pseudodiploid also called pseudoploid refers to one of the essential components in virus viral reproduction. It means having two RNA genomes genome per virion but giving rise to only one DNA copy in infected cells. Overview Retrovirion s for example are considered as pseudoploid in character they have two genomes capsid encapsidated , but in general only one provirus is seen after infection with single virions. Retrovirus particles contain two copies of the RNA genome held together by multiple regions of base pairing strongest pairing at 5 ends which is also called 70S complex dimer biochemistry dimer of 35S genomes . This property gives viruses evolutionary advantages such as the capability to survive extensive damage to their genome s as at least parts of both genomes are used during the reverse transcription process. It also explains the high rates of genetic recombination in retroviruses. The retroviral genome is coated by a viral nucleocapsid NC protein that may function like a single stranded binding protein and therefore is enhancing processivity and facilitating template exchanges. The NC first organizes RNA genomes within the virion and then facilitates reverse transcription within the infected cell. Category Virology Genetics stub ... more details
Unreferenced date November 2006 orphan date November 2009 Orfeome or Orfome is the totality of open reading frames ORF in biology. ORFs are the most important genetic elements in genomes. They code for proteins. Determining ORFs are done by computer programs such as GENSCAN . The computer algorithms are produced by bioinformatists. As ORFs are produced by computer programs, ORFeome s are prediction results by definition. Therefore, ORFeome is a bioinformatics concept. This is the case for genomes, as genomes are also finalized by computer algorithms. On the other hand, a proteome that includes ORFeome is mostly from experimental data generated by techniques such as mass spectrometry . The term ORFeome reflects a new trend in biology that can be succinctly summarized as omics . DEFAULTSORT Orfeome Category Molecular genetics ar ORFeome ... more details
italic title Taxobox color lightgrey name Ehrlichiaceae regnum Bacterium Bacteria phylum Proteobacteria classis Alphaproteobacteria ordo Rickettsiales familia Ehrlichiaceae genus Anaplasma Anaplasma is a genus of rickettsiales bacteria . See also Anaplasma phagocytophilum Anaplasmosis External links MeshName Anaplasma http www.genomesonline.org search.cgi?colcol all&goldstamp ALL&gen type ALL&org name1 genus&gensp Anaplasma&org domain ALL&org status ALL&size2 ALL&org size Kb&gen gc ALL&phylogeny2 ALL&gen institution ALL&gen funding ALL&gen data ALL&cont ALL&gen country ALL&gen pheno ALL&gen eco ALL&gen disease ALL&gen relevance ALL&gen avail ALL&selection submit search Anaplasma Genome Projects from http www.genomesonline.org Genomes OnLine Database http img.jgi.doe.gov cgi bin pub main.cgi?section TaxonList&page lineageMicrobes&genus Anaplasma Comparative Analysis of Anaplasma Genomes at United States Department of Energy DOE s Integrated Microbial Genomes System IMG system bacteria stub Category Rickettsiales Category Sequenced genomes es Anaplasma ja pt Anaplasma ru ... more details
primarysources date December 2008 The http www.nmpdr.org National Microbial Pathogen Data Resource was one of the eight Bioinformatics Resource Centers funded by the National Institutes of Allergy and Infectious Diseases, NIAID a component of the National Institutes of Health NIH , which is an agency of the United States Department of Health and Human Services . The NMPDR was funded for five years from 2004 through a grant to co PI s Rick Stevens from the Computation Institute at the University of Chicago, and Ross Overbeek at the http www.thefig.info Fellowship for the Interpretation of Genomes . The NMPDR was initially tasked with annotating and curating the genomes of five pathogenic species of Bacteria , Campylobacter , Listeria , Staphylococcus , Streptococcus , and Vibrio . However, after four years, the team were asked to also oversee the curation and annotation of the genomes of seven additional bacterial species Chlamydia bacterium Chlamydia , Chlamydophila , Haemophilus , Mycoplasma , Neisseria , Treponema , and Ureaplasma . The flagship website, the http www.nmpdr.org National Microbial Pathogen Data Resource provides curated annotations in an environment for comparative analysis of genomes and biological subsystems. In addition, the NMPDR team have also developed the http rast.nmpdr.org Rapid Annotation using Subsystems Technology Server RAST for annotating and curating complete microbial genomes and the http metagenomics.nmpdr.org Metagenomics RAST for annotating metagenomes. Note to NMPDR Users As of January 2010, the bacterial organism originally covered by NMPDR under the BRC program have been transferred to PATRIC the Pathosystems Resource Integration Center. Category Biology organizations ... more details
Wikify date March 2011 The Variant Call Format VCF is a specification for storing gene sequence variations. The format has been developed with the advent of large scale genotyping and gene sequencing projects, such as the 1000 Genomes Project . Existing formats for genetic data, such as GFF stored all of the genetic data, much of which is redundant because it will be shared across the genomes. By using the variant call format only the variations need to be stored along with a reference genome. The standard is currently in version 4.0, ref cite web url http vcftools.sourceforge.net specs.html title VCF Specification accessdate 1 February 2011 ref ref cite web url http www.1000genomes.org wiki Analysis Variant 20Call 20Format vcf variant call format version 40 title VCF Variant Call Format version 4.0 & 124 1000 Genomes accessdate 1 February 2011 ref although the 1000 genomes project has developed their own specification for structural variations such as duplications, which are not easily accommodated into the existing schema. ref cite web url http www.1000genomes.org wiki Analysis Variant 20Call 20Format VCF 20 28Variant 20Call 20Format 29 20version 204.0 encoding structural variants title Encoding Structural Variants in VCF Variant Call Format version 4.0 & 124 1000 Genomes accessdate 1 February 2011 ref A set of tools are also available for editing and manipulating the files ref cite web url http sourceforge.net projects vcftools files VCFtools 0.1.4.tar.gz download title Download vcftools from SourceForge.net accessdate 1 February 2011 ref References reflist DEFAULTSORT Variant Call Format Category Computer file formats biology stub ... more details
italic title Taxobox color lightgrey name Ralstonia regnum Bacteria phylum Proteobacteria classis Beta Proteobacteria ordo Burkholderiales familia Ralstoniaceae genus Ralstonia subdivision ranks Species subdivision Ralstonia basilensis br Ralstonia campinensis br Ralstonia eutropha br Ralstonia gilardii br Ralstonia insidiosa br Ralstonia mannitolilytica br Ralstonia metallidurans br Ralstonia paucula br Ralstonia pickettii br Ralstonia respiraculi br Ralstonia solanacearum br Ralstonia syzygii br Ralstonia taiwanensis Ralstonia is a genus of proteobacteria , previously included in the genus Pseudomonas . It is named after the American bacteriologist E. Ralston. Genomics http www.genomesonline.org search.cgi?colcol all&goldstamp ALL&gen type ALL&org name1 genus&gensp Ralstonia&org domain ALL&org status ALL&size2 ALL&org size Kb&gen gc ALL&phylogeny2 ALL&gen institution ALL&gen funding ALL&gen data ALL&cont ALL&gen country ALL&gen pheno ALL&gen eco ALL&gen disease ALL&gen relevance ALL&gen avail ALL&selection submit search Ralstonia Genome Projects from http www.genomesonline.org Genomes OnLine Database http img.jgi.doe.gov cgi bin pub main.cgi?section TaxonList&page lineageMicrobes&genus Ralstonia Comparative Analysis of Ralstonia Genomes at United States Department of Energy DOE s Integrated Microbial Genomes System IMG system Category Burkholderiales Proteobacteria stub es Ralstonia fr Ralstonia ... more details
italic title Taxobox color lightgrey name Nitrobacter vulgaris regnum Bacterium Bacteria phylum Proteobacteria classis Alpha Proteobacteria ordo Rhizobiales familia Bradyrhizobiaceae genus Nitrobacter species N. vulgaris binomial Nitrobacter vulgaris binomial authority Nitrobacter vulgaris is a rod shaped, Gram negative bacteria Gram negative , and a Chemotroph chemoautotrophic bacterium. It plays an important role in the nitrogen cycle by oxidizing nitrite into nitrate in soil. It cannot tolerate highly alkaline NH sub 4 sub conditions. NO sub 2 sub 1 2O sub 2 sub NO sub 3 sub Genomics http www.genomesonline.org search.cgi?colcol all&goldstamp ALL&gen type ALL&org name1 genus&gensp Nitrobacter&org domain ALL&org status ALL&size2 ALL&org size Kb&gen gc ALL&phylogeny2 ALL&gen institution ALL&gen funding ALL&gen data ALL&cont ALL&gen country ALL&gen pheno ALL&gen eco ALL&gen disease ALL&gen relevance ALL&gen avail ALL&selection submit search Nitrobacter Genome Projects from http www.genomesonline.org Genomes OnLine Database http img.jgi.doe.gov cgi bin pub main.cgi?section TaxonList&page lineageMicrobes&genus Nitrobacter Comparative Analysis of Nitrobacter Genomes at United States Department of Energy DOE s Integrated Microbial Genomes System IMG system bacteria stub ca Nitrobacter de Nitrobacter et Nitrobacter it Nitrobacter pt Nitrobacter Category Rhizobiales ... more details
The Comprehensive Microbial Resource CMR is a website carrying data on publicly available prokaryotic genomes . Searches for similarities and differences between genomes can be conveniently carried out as all the information is stored on a single website. A Mirror site is kept by the Genome Encyclopedia of Microbes GEM in Korea . The effective display of large scale genome sequencing projects is addressed by this site. The system enables a wide variety of data retrieval. Retrievals may focus on protein properties such as molecular weight or hydrophobicity , GC content , Alpha helix Functional roles functional role assignments and taxonomy . The CMR also has special web based tools to allow data mining using pre run homology searches, whole genome dot plots, Laboratory information system batch download ing and traversal across genomes using a variety of datatypes. http nar.oxfordjournals.org content 29 1 123.full Jeremy D. Peterson et al. External links http cmr.jcvi.org tigr scripts CMR CmrHomePage.cgi Official site http nar.oxfordjournals.org content 29 1 123.full The Comprehensive Microbial Resource Category Databases Category Genetics ... more details
Orphan date January 2011 infobox biodatabase title InSatDb logo File Database.png description Microsatellite genetics microsatellite s of fully sequenced insect genomes. scope organism insect s center laboratory author pmid PMID 17082205 released 2006 standard format url http www.cdfd.org.in insatdb download http cdfd.org.in INSATDB download.php download br http cdfd.org.in INSATDB msatform.php query based webservice sql sparql webapp standalone license versioning frequency curation bookmark version InSatDb is a database of Microsatellite genetics microsatellite s of Genome sequencing sequenced insect genomes ref cite journal quotes yes last Archak first Sunil authorlink coauthors Meduri Eshwar, Kumar P Sravana, Nagaraju J year 2007 month Jan title InSatDb a microsatellite database of fully sequenced insect genomes journal Nucleic Acids Res. volume 35 issue Database issue pages D36 9 publisher location England issn pmid 17082205 doi 10.1093 nar gkl778 bibcode oclc id url pmc 1634736 language eng format accessdate laysummary laysource laydate quote ref See also Microsatellite genetics microsatellite References references External links http www.cdfd.org.in insatdb Category Entomology Category Insects Category Biological databases Category Genetics Category Repetitive DNA sequences Biodatabase stub ... more details
infobox biodatabase title Islander logo File Database.png description integrative islands in prokaryotic genomes scope organism Prokaryote Prokaryotes center Indiana University laboratory author pmid PMID 14681358 released standard format url http www.indiana.edu islander download webservice sql sparql webapp standalone license versioning frequency curation bookmark version Islander is a database of Mobile genetic elements integrative islands in prokaryotic genomes. ref cite journal quotes yes last Mantri first Yogita authorlink coauthors Williams Kelly P year 2004 month Jan title Islander a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities journal Nucleic Acids Res. volume 32 issue Database issue pages D55 8 publisher location England issn pmid 14681358 doi 10.1093 nar gkh059 bibcode oclc id url pmc 308793 language eng format accessdate laysummary laysource laydate quote ref References references See also Mobile genetic elements External links http www.indiana.edu islander Biodatabase stub Category Mobile genetic elements ... more details
Orphan date April 2011 infobox biodatabase title OMA logo File Database.png description orthology inference among 1000 complete genomes. scope organism center laboratory ETH Zurich author pmid released 2004 standard format url http omabrowser.org download webservice http omabrowser.org omabrowser.wsdl wsdl sql sparql webapp standalone license versioning frequency curation bookmark version OMA Orthologous MAtrix is a database of Orthology orthologs extracted from available complete Genome sequencing genomes . ref name pmid21113020 cite journal quotes yes last Altenhoff first Adrian M authorlink coauthors Schneider Adrian, Gonnet Gaston H, Dessimoz Christophe year 2011 month Jan title OMA 2011 orthology inference among 1000 complete genomes journal Nucleic Acids Res. volume 39 issue Database issue pages D289 94 publisher location England issn pmid 21113020 doi 10.1093 nar gkq1238 bibcode oclc id url pmc 3013747 language eng format accessdate laysummary laysource laydate quote ref References references See also Homology biology OrthoDB TreeFam External links http omabrowser.org. Biodatabase stub Category Biological databases Category Evolutionary biology Category Phylogenetics ... more details
A metabolic network is the complete set of metabolic and physical processes that determine the physiology physiological and biochemistry biochemical properties of a cell. As such, these networks comprise the chemical reactions of metabolism as well as the regulatory interactions that guide these reactions. With the sequencing of complete genomes, it is now possible to reconstruct the network of biochemical reactions in many organisms, from bacteria to human. Several of these networks are available online Kyoto Encyclopedia of Genes and Genomes KEGG http www.genome.ad.jp , EcoCyc http www.ecocyc.org , BioCyc http biocyc.org and metaTIGER http www.bioinformatics.leeds.ac.uk metatiger . Metabolic networks are powerful tools, for studying and modelling metabolism. See also Metabolic network modelling Metabolic pathway metabolism Category Metabolism biology stub ca Xarxa metab lica fa nl Metabolisch netwerk zh ... more details
technology cannot read whole genomes in one go, but rather small pieces between 20 and 1000 bases ... assembly. Faced with the challenge of assembling the first larger eukaryotic genomes, the fruit fly ... ref able to handle genomes of 100 300 million base pairs. Subsequent to these efforts, several .... For instance, genomes often have large amounts of repetitive sequences, mainly in the inter genic ... genomes Solexa, SOLiD Simpson, J. et al. 2008 2010 OS http www.bcgsc.ca platform bioinfo software abyss link AMOS genomes Sanger, 454 Salzberg, S. et al. 2002? 2008? OS http sourceforge.net apps mediawiki amos index.php?title AMOS link Celera WGA Assembler CABOG large genomes Sanger, 454, Solexa Myers ... overview link CLC Genomics Workbench genomes Sanger, 454, Solexa, SOLiD CLC bio 2008 2010 C http www.clcbio.com index.php?id 575 link Edena genomes Solexa D. Hernandez, P. Fran ois, L. Farinelli, M. Osteras, and J. Schrenzel. 2008 C http www.genomic.ch edena.php link Euler genomes Sanger, 454 ,Solexa ? Pevzner, P. et al. 2001 2006? C NC A? http nbcr.sdsc.edu euler link Euler sr genomes 454, Solexa Chaisson, MJ. et al. 2008 NC A http euler assembler.ucsd.edu portal link Forge large genomes, EST ... genomes Sanger, 454, Solexa Biomatters Biomatters Ltd 2009 2010 C http geneious.com link IDBA Iterative De Bruijn graph short read Assembler large genomes Sanger,454,Solexa Yu Peng, Henry C. M ... Intelligent Read Assembly genomes, ESTs Sanger, 454, Solexa Chevreux, B. 1998 2010 OS http sourceforge.net apps mediawiki mira assembler link NextGENe small genomes? 454, Solexa, SOLiD Softgenetics 2008 C http softgenetics.com NextGENe.html link Newbler genomes, ESTs 454, Sanger 454 Roche 2009 C http www.454.com link Phrap genomes Sanger, 454 Green, P. 2002 2003 2008 C NC A http www.phrap.org ... url http www.liebertonline.com doi abs 10.1089 cmb.2009.0238 ref genomes Illumina, mix of Illumina ... General Public License http denovoassembler.sf.net link Sequencher small genomes Sanger Gene Codes ... more details
Gilean Gil McVean is a professor of statistical genetics at the University of Oxford and a fellow of Linacre College . He is a member of the 1000 Genomes Project steering committee. External links The http www.stats.ox.ac.uk mcvean McVean Group at the University of Oxford DEFAULTSORT Macvean, Gilean Category Year of birth missing living people Category Living people Category Fellows of Linacre College, Oxford Category British statisticians Category Population geneticists UK mathematician stub UK statistician stub ... more details
Taxobox name Amphimedon regnum Animal ia phylum Porifera classis Demospongiae ordo Haplosclerida subordo Haplosclerina familia Niphatidae genus Amphimedon Amphimedon is a genus of sponge . There are over 60 described species. ref http www.marinespecies.org porifera porifera.php?p search ref The genome of one, Amphimedon queenslandica , has been sequenced. ref cite doi 10.1038 nature09201 ref References reflist Category Demospongiae Category Sequenced genomes Category Poriferans ... more details
data. http img.jgi.doe.gov Integrated Microbial Genomes IMG system by the DOE Joint Genome Institute ... and interrogating the SEED database of complete microbial genomes http genome.ucsc.edu UCSC ... and analysis tools for annotated whole genomes from the eleven virus families in the VBRC ... more details
Encyclopedia
top
