Since developing AMOVA, Excoffier has written a program for running such analyses. This program, which runs on Windows is called Arlequin, and is freely available on Excoffier's website.
↑ Excoffier, L.; Smouse, P. E.; and Quattro, J. M. 1992. "Analysis of Molecular Variance Inferred from Metric Distances among DNA Haplotypes: Application to Human Mitochondrial DNA Restriction Data." Genetics 131. pp 479-491.